Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18510

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
4,005,153	+		RR42_RS18505	0.36	-0.3
4,005,153	+		RR42_RS18505	0.36	+0.0
4,005,215	-		RR42_RS18505	0.41	+0.3
4,005,217	+		RR42_RS18505	0.41	+1.1
4,005,218	-		RR42_RS18505	0.41	+0.5
4,005,218	-		RR42_RS18505	0.41	-0.4
4,005,218	-		RR42_RS18505	0.41	+0.3
4,005,229	-		RR42_RS18505	0.42	+0.3
4,005,321	+		RR42_RS18505	0.50	+1.1
4,005,322	-		RR42_RS18505	0.50	+1.1
4,005,322	-		RR42_RS18505	0.50	+0.2
4,005,322	-		RR42_RS18505	0.50	+0.3
4,005,360	+		RR42_RS18505	0.53	-1.0
4,005,361	-		RR42_RS18505	0.53	+0.1
4,005,361	-		RR42_RS18505	0.53	-0.8
4,005,361	-		RR42_RS18505	0.53	+0.9
4,005,475	+		RR42_RS18505	0.62	-1.1
4,005,580	-		RR42_RS18505	0.71	+0.8
4,005,580	-		RR42_RS18505	0.71	-1.5
4,005,580	-		RR42_RS18505	0.71	+0.1
4,005,967	+				+0.0
4,005,968	-				+0.2
4,005,968	-				-1.7
4,005,976	+				-0.3
4,005,976	+				+0.3
4,005,976	+				-0.1
4,005,977	-				+0.3
4,005,977	-				+0.3
4,005,977	-				+1.0
4,006,041	+				+1.0
4,006,042	-				-0.5
4,006,353	-		RR42_RS18510	0.54	-0.4
4,006,417	+		RR42_RS18510	0.69	-0.4
4,006,417	+		RR42_RS18510	0.69	-0.5
4,006,417	+		RR42_RS18510	0.69	-0.9
4,006,418	-		RR42_RS18510	0.69	-0.5
4,006,418	-		RR42_RS18510	0.69	+0.8
4,006,581	+				+1.0
4,006,582	-				+0.5
4,006,582	-				+0.2
4,006,612	+				-1.3
4,006,612	+				-1.2
4,006,613	-				+0.1
4,006,613	-				-0.7
4,006,613	-				-0.7
4,006,613	-				+0.8
4,006,613	-				-0.5
4,006,613	-				-0.7
4,006,616	+				+1.3
4,006,616	+				-1.0
4,006,616	+				+0.1
4,006,616	+				+0.3
4,006,616	+				+0.1
4,006,616	+				-0.8
4,006,616	+				-0.5
4,006,616	+				-0.6
4,006,616	+				-1.8
4,006,616	+				+0.4
4,006,617	-				-0.8
4,006,617	-				-0.5
4,006,876	+		RR42_RS18515	0.27	-0.2
4,006,876	+		RR42_RS18515	0.27	-0.0
4,006,876	+		RR42_RS18515	0.27	+0.3
4,006,876	+		RR42_RS18515	0.27	-0.1
4,006,885	+		RR42_RS18515	0.28	+1.3
4,006,886	-		RR42_RS18515	0.28	-0.3
4,006,981	+		RR42_RS18515	0.40	-1.0
4,006,982	-		RR42_RS18515	0.40	+2.1
4,007,120	-		RR42_RS18515	0.57	-0.2
4,007,297	-		RR42_RS18515	0.79	-1.0
4,007,380	+		RR42_RS18515	0.89	-2.3
4,007,380	+		RR42_RS18515	0.89	-1.4
4,007,380	+		RR42_RS18515	0.89	-0.9
4,007,380	+		RR42_RS18515	0.89	-1.5
4,007,380	+		RR42_RS18515	0.89	-0.3
4,007,380	+		RR42_RS18515	0.89	+1.6
4,007,381	-		RR42_RS18515	0.89	-0.1
4,007,381	-		RR42_RS18515	0.89	-0.3
4,007,381	-		RR42_RS18515	0.89	-2.0
4,007,381	-		RR42_RS18515	0.89	-1.1
4,007,381	-		RR42_RS18515	0.89	+0.4
4,007,381	-		RR42_RS18515	0.89	+0.6
4,007,522	-				+0.2
4,007,522	-				-0.6
4,007,522	-				-0.9