Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS18010

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,893,923	+				+0.5
3,893,923	+				+0.1
3,893,923	+				-1.2
3,893,924	-				-0.4
3,893,924	-				-3.9
3,893,940	+				+0.6
3,893,946	+				+0.4
3,893,947	-				-0.3
3,893,954	+				+0.6
3,893,955	-				-0.1
3,894,009	+		RR42_RS18000	0.10	+0.3
3,894,010	-		RR42_RS18000	0.10	+0.2
3,894,342	+		RR42_RS18000	0.54	+0.1
3,894,342	+		RR42_RS18000	0.54	+0.1
3,894,342	+		RR42_RS18000	0.54	+0.5
3,894,343	-		RR42_RS18000	0.54	+0.5
3,894,343	-		RR42_RS18000	0.54	-0.4
3,894,343	-		RR42_RS18000	0.54	+0.1
3,894,343	-		RR42_RS18000	0.54	-0.7
3,894,495	+		RR42_RS18000	0.74	+0.6
3,894,495	+		RR42_RS18000	0.74	-0.1
3,894,495	+		RR42_RS18000	0.74	-0.4
3,894,496	-		RR42_RS18000	0.74	+0.3
3,894,522	+		RR42_RS18000	0.78	+0.3
3,894,522	+		RR42_RS18000	0.78	+1.7
3,894,523	-		RR42_RS18000	0.78	+0.1
3,894,591	+		RR42_RS18000	0.87	+0.0
3,894,591	+		RR42_RS18000	0.87	-1.4
3,894,591	+		RR42_RS18000	0.87	-0.2
3,894,591	+		RR42_RS18000	0.87	-0.0
3,894,591	+		RR42_RS18000	0.87	-0.1
3,894,591	+		RR42_RS18000	0.87	+0.1
3,894,592	-		RR42_RS18000	0.87	+0.6
3,894,592	-		RR42_RS18000	0.87	+0.5
3,894,592	-		RR42_RS18000	0.87	-0.5
3,894,592	-		RR42_RS18000	0.87	-0.1
3,894,592	-		RR42_RS18000	0.87	+0.8
3,894,704	+				+1.6
3,894,704	+				-0.5
3,894,704	+				+0.0
3,894,753	+		RR42_RS18005	0.32	-1.0
3,894,754	-		RR42_RS18005	0.32	-0.3
3,894,754	-		RR42_RS18005	0.32	-0.0
3,894,820	+		RR42_RS18005	0.68	+0.1
3,894,821	-		RR42_RS18005	0.68	-2.6
3,894,821	-		RR42_RS18005	0.68	-0.4
3,894,877	+				+0.3
3,894,877	+				+0.9
3,894,878	-				-0.1
3,894,878	-				+0.6
3,894,878	-				-0.0
3,894,878	-				-0.5
3,894,878	-				-0.4
3,894,878	-				-0.3
3,894,966	+		RR42_RS18010	0.11	-0.1
3,894,966	+		RR42_RS18010	0.11	-0.8
3,894,985	+		RR42_RS18010	0.15	-0.3
3,894,985	+		RR42_RS18010	0.15	-0.4
3,894,985	+		RR42_RS18010	0.15	+0.8
3,894,985	+		RR42_RS18010	0.15	+0.5
3,894,986	-		RR42_RS18010	0.15	-0.7
3,894,986	-		RR42_RS18010	0.15	+0.3
3,894,986	-		RR42_RS18010	0.15	+0.6
3,894,986	-		RR42_RS18010	0.15	-0.2
3,894,986	-		RR42_RS18010	0.15	-0.6
3,894,986	-		RR42_RS18010	0.15	+0.1
3,894,986	-		RR42_RS18010	0.15	-1.2
3,895,082	+		RR42_RS18010	0.37	+0.3
3,895,082	+		RR42_RS18010	0.37	-0.0
3,895,082	+		RR42_RS18010	0.37	-0.2
3,895,082	+		RR42_RS18010	0.37	+0.4
3,895,082	+		RR42_RS18010	0.37	-1.6
3,895,082	+		RR42_RS18010	0.37	-1.2
3,895,082	+		RR42_RS18010	0.37	-0.2
3,895,082	+		RR42_RS18010	0.37	-1.4
3,895,082	+		RR42_RS18010	0.37	+0.7
3,895,082	+		RR42_RS18010	0.37	+0.1
3,895,083	-		RR42_RS18010	0.37	+0.1
3,895,083	-		RR42_RS18010	0.37	-1.0
3,895,083	-		RR42_RS18010	0.37	-0.4
3,895,095	-		RR42_RS18010	0.40	-0.2
3,895,095	-		RR42_RS18010	0.40	-1.5
3,895,232	+		RR42_RS18010	0.71	-0.1
3,895,232	+		RR42_RS18010	0.71	-0.5
3,895,233	-		RR42_RS18010	0.71	+0.7
3,895,387	+				-0.9
3,895,387	+				-0.0
3,895,387	+				-0.4
3,895,387	+				+0.1
3,895,387	+				-0.1
3,895,387	+				-0.8
3,895,387	+				-1.2
3,895,388	-				-0.1
3,895,388	-				-0.4
3,895,388	-				+1.1
3,895,388	-				+0.2
3,895,388	-				+0.1
3,895,388	-				+1.1
3,895,388	-				+0.1
3,895,388	-				+0.1
3,895,388	-				-0.0
3,895,388	-				+0.1
3,895,552	+		RR42_RS18015	0.22	+0.7
3,895,552	+		RR42_RS18015	0.22	+0.2
3,895,553	-		RR42_RS18015	0.22	+0.3
3,895,553	-		RR42_RS18015	0.22	+0.3
3,895,553	-		RR42_RS18015	0.22	+0.2
3,895,553	-		RR42_RS18015	0.22	-0.2
3,895,573	+		RR42_RS18015	0.24	-1.3
3,895,666	+		RR42_RS18015	0.34	-0.6
3,895,667	-		RR42_RS18015	0.34	-0.4
3,895,687	+		RR42_RS18015	0.37	-0.0
3,895,723	+		RR42_RS18015	0.41	-0.5
3,895,723	+		RR42_RS18015	0.41	+0.1
3,895,723	+		RR42_RS18015	0.41	-0.3
3,895,724	-		RR42_RS18015	0.41	+0.4
3,896,030	+		RR42_RS18015	0.75	+0.0
3,896,031	-		RR42_RS18015	0.75	-0.3
3,896,031	-		RR42_RS18015	0.75	+0.6
3,896,116	+		RR42_RS18015	0.84	+0.1
3,896,117	-		RR42_RS18015	0.84	-1.1
3,896,231	+				-0.3
3,896,231	+				-0.3
3,896,231	+				-0.2
3,896,231	+				-0.3
3,896,232	-				-0.2
3,896,232	-				+0.8
3,896,232	-				+0.7
3,896,232	-				+0.1
3,896,232	-				-0.2