Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14860
Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Polymyxin B sulfate 0.005 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,202,804 | - | RR42_RS14855 | 0.50 | +0.2 | |
3,202,804 | - | RR42_RS14855 | 0.50 | +0.3 | |
3,202,887 | - | RR42_RS14855 | 0.55 | +0.3 | |
3,202,887 | - | RR42_RS14855 | 0.55 | -0.5 | |
3,203,035 | - | RR42_RS14855 | 0.63 | -1.5 | |
3,203,140 | - | RR42_RS14855 | 0.70 | -1.2 | |
3,203,225 | + | RR42_RS14855 | 0.75 | +0.1 | |
3,203,225 | + | RR42_RS14855 | 0.75 | -1.2 | |
3,203,226 | - | RR42_RS14855 | 0.75 | +0.2 | |
3,203,330 | + | RR42_RS14855 | 0.81 | +1.4 | |
3,203,330 | + | RR42_RS14855 | 0.81 | -0.6 | |
3,203,369 | + | RR42_RS14855 | 0.83 | -0.2 | |
3,203,369 | + | RR42_RS14855 | 0.83 | -0.7 | |
3,203,559 | - | +0.4 | |||
3,203,698 | + | RR42_RS14860 | 0.11 | +0.9 | |
3,203,725 | - | RR42_RS14860 | 0.25 | +1.2 | |
3,203,725 | - | RR42_RS14860 | 0.25 | -0.6 | |
3,203,858 | + | -0.1 | |||
3,203,859 | - | -0.2 | |||
3,203,868 | + | -0.5 | |||
3,204,689 | - | -0.9 |
Or see this region's nucleotide sequence