Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14860

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14855 and RR42_RS14860 are separated by 22 nucleotidesRR42_RS14860 and RR42_RS14865 are separated by 209 nucleotidesRR42_RS14865 and RR42_RS14870 are separated by 25 nucleotides RR42_RS14855: RR42_RS14855 - monooxygenase, at 3,201,962 to 3,203,653 _RS14855 RR42_RS14860: RR42_RS14860 - hypothetical protein, at 3,203,676 to 3,203,870 _RS14860 RR42_RS14865: RR42_RS14865 - hypothetical protein, at 3,204,080 to 3,204,562 _RS14865 RR42_RS14870: RR42_RS14870 - hypothetical protein, at 3,204,588 to 3,205,784 _RS14870 Position (kb) 3203 3204Strain fitness (log2 ratio) -1 0 1at 3202.804 kb on - strand, within RR42_RS14855at 3202.804 kb on - strand, within RR42_RS14855at 3202.887 kb on - strand, within RR42_RS14855at 3202.887 kb on - strand, within RR42_RS14855at 3203.035 kb on - strand, within RR42_RS14855at 3203.140 kb on - strand, within RR42_RS14855at 3203.225 kb on + strand, within RR42_RS14855at 3203.225 kb on + strand, within RR42_RS14855at 3203.226 kb on - strand, within RR42_RS14855at 3203.330 kb on + strand, within RR42_RS14855at 3203.330 kb on + strand, within RR42_RS14855at 3203.369 kb on + strand, within RR42_RS14855at 3203.369 kb on + strand, within RR42_RS14855at 3203.559 kb on - strandat 3203.698 kb on + strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.725 kb on - strand, within RR42_RS14860at 3203.858 kb on + strandat 3203.859 kb on - strandat 3203.868 kb on + strandat 3204.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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3,202,804 - RR42_RS14855 0.50 +0.2
3,202,804 - RR42_RS14855 0.50 +0.3
3,202,887 - RR42_RS14855 0.55 +0.3
3,202,887 - RR42_RS14855 0.55 -0.5
3,203,035 - RR42_RS14855 0.63 -1.5
3,203,140 - RR42_RS14855 0.70 -1.2
3,203,225 + RR42_RS14855 0.75 +0.1
3,203,225 + RR42_RS14855 0.75 -1.2
3,203,226 - RR42_RS14855 0.75 +0.2
3,203,330 + RR42_RS14855 0.81 +1.4
3,203,330 + RR42_RS14855 0.81 -0.6
3,203,369 + RR42_RS14855 0.83 -0.2
3,203,369 + RR42_RS14855 0.83 -0.7
3,203,559 - +0.4
3,203,698 + RR42_RS14860 0.11 +0.9
3,203,725 - RR42_RS14860 0.25 +1.2
3,203,725 - RR42_RS14860 0.25 -0.6
3,203,858 + -0.1
3,203,859 - -0.2
3,203,868 + -0.5
3,204,689 - -0.9

Or see this region's nucleotide sequence