Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14555

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
3,131,081	+				-0.7
3,131,082	-				-0.3
3,131,082	-				+0.3
3,131,089	+				+0.5
3,131,146	-		RR42_RS14550	0.16	+0.2
3,131,207	-		RR42_RS14550	0.28	-0.9
3,131,465	+		RR42_RS14550	0.80	-0.3
3,131,468	+		RR42_RS14550	0.80	-0.1
3,131,469	-		RR42_RS14550	0.81	-0.8
3,131,537	-				-0.0
3,131,537	-				-1.1
3,131,614	-				+0.4
3,131,630	-				-1.3
3,131,630	-				-0.1
3,131,739	+				-0.1
3,131,739	+				+0.1
3,131,740	-				+0.1
3,131,813	-				-0.6
3,132,523	+		RR42_RS14555	0.31	-0.9
3,132,523	+		RR42_RS14555	0.31	-1.8
3,132,523	+		RR42_RS14555	0.31	-0.9
3,132,524	-		RR42_RS14555	0.31	+1.6
3,132,524	-		RR42_RS14555	0.31	-1.2
3,132,526	+		RR42_RS14555	0.31	-0.9
3,132,527	-		RR42_RS14555	0.31	+0.3
3,132,562	+		RR42_RS14555	0.33	+1.3
3,132,706	+		RR42_RS14555	0.40	-1.5
3,132,706	+		RR42_RS14555	0.40	-0.8
3,132,706	+		RR42_RS14555	0.40	-1.4
3,132,707	-		RR42_RS14555	0.41	-2.7
3,132,881	-		RR42_RS14555	0.50	-1.2
3,132,931	+		RR42_RS14555	0.52	-0.8
3,132,931	+		RR42_RS14555	0.52	-0.2
3,132,994	+		RR42_RS14555	0.56	-0.8
3,132,995	-		RR42_RS14555	0.56	-1.4
3,133,010	-		RR42_RS14555	0.56	-0.4
3,133,043	-		RR42_RS14555	0.58	-2.3
3,133,082	-		RR42_RS14555	0.60	-1.2
3,133,082	-		RR42_RS14555	0.60	-2.4
3,133,093	+		RR42_RS14555	0.61	-0.3
3,133,094	-		RR42_RS14555	0.61	+0.2
3,133,178	-		RR42_RS14555	0.65	-0.6
3,133,459	+		RR42_RS14555	0.80	-2.4
3,133,460	-		RR42_RS14555	0.80	+0.1
3,133,857	-				+0.8
3,133,923	+				+0.5
3,133,923	+				-1.4
3,133,923	+				-1.1
3,133,924	-				-0.8
3,133,956	+				-1.2
3,133,957	-				+0.3
3,134,131	-				-0.9
3,134,131	-				+0.8
3,134,131	-				-1.4
3,134,193	+		RR42_RS14560	0.12	-0.6
3,134,194	-		RR42_RS14560	0.12	-1.8
3,134,194	-		RR42_RS14560	0.12	-0.1
3,134,194	-		RR42_RS14560	0.12	+0.2
3,134,331	+		RR42_RS14560	0.21	-0.9
3,134,331	+		RR42_RS14560	0.21	-0.4
3,134,472	+		RR42_RS14560	0.31	-1.9
3,134,473	-		RR42_RS14560	0.31	-1.4
3,134,473	-		RR42_RS14560	0.31	+0.0
3,134,473	-		RR42_RS14560	0.31	-1.0
3,134,473	-		RR42_RS14560	0.31	+0.0
3,134,544	+		RR42_RS14560	0.35	-0.6
3,134,544	+		RR42_RS14560	0.35	+0.2
3,134,544	+		RR42_RS14560	0.35	-0.4
3,134,544	+		RR42_RS14560	0.35	-0.5
3,134,545	-		RR42_RS14560	0.35	-0.7
3,134,545	-		RR42_RS14560	0.35	+1.6
3,134,545	-		RR42_RS14560	0.35	+0.8
3,134,545	-		RR42_RS14560	0.35	+0.3
3,134,574	+		RR42_RS14560	0.37	+0.8
3,134,575	-		RR42_RS14560	0.37	-0.2
3,134,575	-		RR42_RS14560	0.37	+0.5
3,134,575	-		RR42_RS14560	0.37	+0.8
3,134,575	-		RR42_RS14560	0.37	+1.5
3,134,727	+		RR42_RS14560	0.47	-1.0
3,134,728	-		RR42_RS14560	0.47	-0.1
3,134,728	-		RR42_RS14560	0.47	+0.1
3,134,827	-		RR42_RS14560	0.54	-0.2
3,134,827	-		RR42_RS14560	0.54	-1.5
3,134,827	-		RR42_RS14560	0.54	+0.5