Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11140

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
2,377,925	+		RR42_RS11130	0.89	-0.6
2,377,950	-				-0.2
2,377,967	-				+0.5
2,378,052	+				+0.3
2,378,331	+		RR42_RS11135	0.42	-0.8
2,378,332	-		RR42_RS11135	0.42	-0.5
2,378,356	+		RR42_RS11135	0.45	+1.1
2,378,357	-		RR42_RS11135	0.45	+0.4
2,378,445	+		RR42_RS11135	0.57	-1.2
2,378,446	-		RR42_RS11135	0.57	+0.0
2,378,512	+		RR42_RS11135	0.65	+0.4
2,378,512	+		RR42_RS11135	0.65	-1.0
2,378,513	-		RR42_RS11135	0.66	+0.3
2,378,654	-		RR42_RS11135	0.84	+0.1
2,378,654	-		RR42_RS11135	0.84	-0.2
2,378,750	+				-1.8
2,378,751	-				+0.1
2,378,751	-				-0.8
2,378,807	-				-0.0
2,378,972	+		RR42_RS11140	0.15	+0.7
2,379,038	+		RR42_RS11140	0.20	+1.3
2,379,155	+		RR42_RS11140	0.29	-0.4
2,379,482	+		RR42_RS11140	0.54	+0.0
2,379,482	+		RR42_RS11140	0.54	-0.7
2,379,482	+		RR42_RS11140	0.54	+0.3
2,379,482	+		RR42_RS11140	0.54	+0.1
2,379,483	-		RR42_RS11140	0.54	-0.3
2,379,483	-		RR42_RS11140	0.54	-0.7
2,379,483	-		RR42_RS11140	0.54	+0.4
2,379,524	+		RR42_RS11140	0.57	-2.5
2,379,527	+		RR42_RS11140	0.57	-0.3
2,379,528	-		RR42_RS11140	0.57	-0.1
2,379,594	+		RR42_RS11140	0.62	-0.6
2,379,708	-		RR42_RS11140	0.71	+1.0
2,379,799	-		RR42_RS11140	0.78	-0.8
2,379,799	-		RR42_RS11140	0.78	-0.3
2,379,890	+		RR42_RS11140	0.85	-0.3
2,379,890	+		RR42_RS11140	0.85	-0.8
2,379,906	+		RR42_RS11140	0.86	-0.4
2,379,907	-		RR42_RS11140	0.86	-0.5
2,380,098	+				+0.3
2,380,098	+				-0.4
2,380,099	-				-0.3
2,380,206	-		RR42_RS11145	0.11	-1.0
2,380,338	-		RR42_RS11145	0.25	+0.6
2,380,415	-		RR42_RS11145	0.33	+1.5
2,380,415	-		RR42_RS11145	0.33	+1.3
2,380,415	-		RR42_RS11145	0.33	+0.6
2,380,499	-		RR42_RS11145	0.42	+0.6
2,380,582	-		RR42_RS11145	0.51	+0.1
2,380,582	-		RR42_RS11145	0.51	-1.7
2,380,653	-		RR42_RS11145	0.58	-0.2
2,380,716	-		RR42_RS11145	0.65	-1.0
2,380,743	+		RR42_RS11145	0.68	+0.5
2,380,759	+		RR42_RS11145	0.70	+1.3
2,380,760	-		RR42_RS11145	0.70	-0.1
2,380,785	+		RR42_RS11145	0.72	-0.2
2,380,785	+		RR42_RS11145	0.72	-0.1
2,380,785	+		RR42_RS11145	0.72	-0.3
2,380,785	+		RR42_RS11145	0.72	-1.0
2,380,918	+		RR42_RS11145	0.86	+0.2
2,380,918	+		RR42_RS11145	0.86	+0.2
2,380,918	+		RR42_RS11145	0.86	-1.4
2,380,919	-				+2.1
2,380,920	+		RR42_RS11145	0.86	-0.4
2,380,920	+		RR42_RS11145	0.86	-0.3
2,380,920	+		RR42_RS11145	0.86	+0.6
2,380,920	+		RR42_RS11145	0.86	+0.5
2,380,921	-		RR42_RS11145	0.87	+1.2
2,380,921	-		RR42_RS11145	0.87	-0.1
2,381,008	-				+0.1
2,381,052	+				+0.5
2,381,052	+				-2.3
2,381,053	-				+0.2