Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08985 and RR42_RS08990 are separated by 188 nucleotides RR42_RS08990 and RR42_RS08995 are separated by 240 nucleotides
RR42_RS08985: RR42_RS08985 - diguanylate cyclase, at 1,886,417 to 1,888,045
_RS08985
RR42_RS08990: RR42_RS08990 - DNA polymerase, at 1,888,234 to 1,889,397
_RS08990
RR42_RS08995: RR42_RS08995 - hypothetical protein, at 1,889,638 to 1,890,129
_RS08995
Position (kb) 1888
1889
1890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1887.258 kb on - strand, within RR42_RS08985 at 1887.424 kb on + strand, within RR42_RS08985 at 1887.424 kb on + strand, within RR42_RS08985 at 1887.425 kb on - strand, within RR42_RS08985 at 1887.425 kb on - strand, within RR42_RS08985 at 1887.425 kb on - strand, within RR42_RS08985 at 1887.426 kb on + strand, within RR42_RS08985 at 1887.426 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.497 kb on + strand, within RR42_RS08985 at 1887.498 kb on - strand, within RR42_RS08985 at 1887.498 kb on - strand, within RR42_RS08985 at 1887.498 kb on - strand, within RR42_RS08985 at 1887.498 kb on - strand, within RR42_RS08985 at 1887.498 kb on - strand, within RR42_RS08985 at 1887.514 kb on - strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.543 kb on + strand, within RR42_RS08985 at 1887.544 kb on - strand, within RR42_RS08985 at 1887.544 kb on - strand, within RR42_RS08985 at 1887.544 kb on - strand, within RR42_RS08985 at 1887.544 kb on - strand, within RR42_RS08985 at 1887.544 kb on - strand, within RR42_RS08985 at 1887.547 kb on + strand, within RR42_RS08985 at 1887.547 kb on + strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.548 kb on - strand, within RR42_RS08985 at 1887.612 kb on + strand, within RR42_RS08985 at 1887.613 kb on - strand, within RR42_RS08985 at 1887.613 kb on - strand, within RR42_RS08985 at 1887.613 kb on - strand, within RR42_RS08985 at 1887.961 kb on + strand at 1887.961 kb on + strand at 1887.961 kb on + strand at 1887.961 kb on + strand at 1887.962 kb on - strand at 1887.962 kb on - strand at 1888.031 kb on + strand at 1888.031 kb on + strand at 1888.049 kb on + strand at 1888.057 kb on + strand at 1888.057 kb on + strand at 1888.057 kb on + strand at 1888.057 kb on + strand at 1888.058 kb on - strand at 1888.058 kb on - strand at 1888.058 kb on - strand at 1888.082 kb on - strand at 1888.096 kb on + strand at 1888.183 kb on - strand at 1888.201 kb on - strand at 1888.201 kb on - strand at 1888.203 kb on + strand at 1888.203 kb on + strand at 1888.203 kb on + strand at 1888.203 kb on + strand at 1888.204 kb on - strand at 1888.204 kb on - strand at 1888.204 kb on - strand at 1888.235 kb on + strand at 1888.454 kb on + strand, within RR42_RS08990 at 1888.487 kb on + strand, within RR42_RS08990 at 1888.487 kb on + strand, within RR42_RS08990 at 1888.679 kb on + strand, within RR42_RS08990 at 1888.798 kb on - strand, within RR42_RS08990 at 1888.798 kb on - strand, within RR42_RS08990 at 1888.798 kb on - strand, within RR42_RS08990 at 1889.009 kb on + strand, within RR42_RS08990 at 1889.010 kb on - strand, within RR42_RS08990 at 1889.081 kb on + strand, within RR42_RS08990 at 1889.082 kb on - strand, within RR42_RS08990 at 1889.082 kb on - strand, within RR42_RS08990 at 1889.189 kb on + strand, within RR42_RS08990 at 1889.190 kb on - strand, within RR42_RS08990 at 1889.222 kb on + strand, within RR42_RS08990 at 1889.223 kb on - strand, within RR42_RS08990 at 1889.263 kb on + strand, within RR42_RS08990 at 1889.263 kb on + strand, within RR42_RS08990 at 1889.264 kb on - strand, within RR42_RS08990 at 1889.348 kb on + strand at 1889.348 kb on + strand at 1889.419 kb on - strand at 1889.426 kb on + strand at 1889.452 kb on + strand at 1889.475 kb on - strand at 1889.489 kb on + strand at 1889.489 kb on + strand at 1889.489 kb on + strand at 1889.489 kb on + strand at 1889.490 kb on - strand at 1889.490 kb on - strand at 1889.490 kb on - strand at 1889.490 kb on - strand at 1889.569 kb on + strand at 1889.801 kb on + strand, within RR42_RS08995 at 1889.801 kb on + strand, within RR42_RS08995 at 1889.802 kb on - strand, within RR42_RS08995 at 1889.802 kb on - strand, within RR42_RS08995 at 1889.884 kb on + strand, within RR42_RS08995 at 1890.130 kb on - strand at 1890.171 kb on + strand at 1890.171 kb on + strand at 1890.172 kb on - strand at 1890.232 kb on + strand at 1890.232 kb on + strand at 1890.233 kb on - strand at 1890.233 kb on - strand at 1890.259 kb on - strand at 1890.259 kb on - strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.269 kb on + strand at 1890.270 kb on - strand at 1890.270 kb on - strand at 1890.270 kb on - strand at 1890.291 kb on + strand at 1890.291 kb on + strand at 1890.291 kb on + strand at 1890.292 kb on - strand at 1890.292 kb on - strand at 1890.292 kb on - strand at 1890.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 1,887,258 - RR42_RS08985 0.52 -0.3 1,887,424 + RR42_RS08985 0.62 -0.7 1,887,424 + RR42_RS08985 0.62 +0.4 1,887,425 - RR42_RS08985 0.62 -0.1 1,887,425 - RR42_RS08985 0.62 -0.3 1,887,425 - RR42_RS08985 0.62 -0.3 1,887,426 + RR42_RS08985 0.62 -0.0 1,887,426 + RR42_RS08985 0.62 -0.9 1,887,497 + RR42_RS08985 0.66 -0.3 1,887,497 + RR42_RS08985 0.66 +0.2 1,887,497 + RR42_RS08985 0.66 -1.1 1,887,497 + RR42_RS08985 0.66 -0.4 1,887,497 + RR42_RS08985 0.66 +0.3 1,887,497 + RR42_RS08985 0.66 +0.9 1,887,498 - RR42_RS08985 0.66 +0.4 1,887,498 - RR42_RS08985 0.66 -1.9 1,887,498 - RR42_RS08985 0.66 +1.0 1,887,498 - RR42_RS08985 0.66 -0.1 1,887,498 - RR42_RS08985 0.66 +0.0 1,887,514 - RR42_RS08985 0.67 -0.1 1,887,543 + RR42_RS08985 0.69 -0.6 1,887,543 + RR42_RS08985 0.69 +0.2 1,887,543 + RR42_RS08985 0.69 +0.9 1,887,543 + RR42_RS08985 0.69 -0.4 1,887,543 + RR42_RS08985 0.69 -0.2 1,887,543 + RR42_RS08985 0.69 -0.6 1,887,543 + RR42_RS08985 0.69 -1.0 1,887,543 + RR42_RS08985 0.69 +0.5 1,887,543 + RR42_RS08985 0.69 +1.7 1,887,544 - RR42_RS08985 0.69 +0.8 1,887,544 - RR42_RS08985 0.69 +0.9 1,887,544 - RR42_RS08985 0.69 +1.1 1,887,544 - RR42_RS08985 0.69 +0.1 1,887,544 - RR42_RS08985 0.69 -1.5 1,887,547 + RR42_RS08985 0.69 +0.1 1,887,547 + RR42_RS08985 0.69 +0.5 1,887,548 - RR42_RS08985 0.69 -1.2 1,887,548 - RR42_RS08985 0.69 +0.2 1,887,548 - RR42_RS08985 0.69 -0.3 1,887,548 - RR42_RS08985 0.69 -0.4 1,887,548 - RR42_RS08985 0.69 +2.6 1,887,548 - RR42_RS08985 0.69 -1.0 1,887,612 + RR42_RS08985 0.73 -0.5 1,887,613 - RR42_RS08985 0.73 +0.8 1,887,613 - RR42_RS08985 0.73 +0.2 1,887,613 - RR42_RS08985 0.73 +0.5 1,887,961 + -0.5 1,887,961 + -1.0 1,887,961 + +0.5 1,887,961 + +0.8 1,887,962 - -0.4 1,887,962 - -0.8 1,888,031 + -0.7 1,888,031 + +0.3 1,888,049 + +0.1 1,888,057 + +0.1 1,888,057 + +1.6 1,888,057 + +1.3 1,888,057 + -1.2 1,888,058 - +0.3 1,888,058 - +1.2 1,888,058 - -0.3 1,888,082 - +0.6 1,888,096 + +1.5 1,888,183 - -0.4 1,888,201 - +0.6 1,888,201 - -0.2 1,888,203 + -0.3 1,888,203 + -0.4 1,888,203 + +0.9 1,888,203 + +1.1 1,888,204 - +2.1 1,888,204 - +0.5 1,888,204 - -0.0 1,888,235 + -0.1 1,888,454 + RR42_RS08990 0.19 +0.2 1,888,487 + RR42_RS08990 0.22 +1.9 1,888,487 + RR42_RS08990 0.22 -2.0 1,888,679 + RR42_RS08990 0.38 -0.1 1,888,798 - RR42_RS08990 0.48 +0.5 1,888,798 - RR42_RS08990 0.48 -0.6 1,888,798 - RR42_RS08990 0.48 -1.3 1,889,009 + RR42_RS08990 0.67 +0.8 1,889,010 - RR42_RS08990 0.67 -0.6 1,889,081 + RR42_RS08990 0.73 -0.4 1,889,082 - RR42_RS08990 0.73 -0.4 1,889,082 - RR42_RS08990 0.73 +1.1 1,889,189 + RR42_RS08990 0.82 -0.0 1,889,190 - RR42_RS08990 0.82 +0.7 1,889,222 + RR42_RS08990 0.85 -1.2 1,889,223 - RR42_RS08990 0.85 +0.3 1,889,263 + RR42_RS08990 0.88 -0.9 1,889,263 + RR42_RS08990 0.88 +0.7 1,889,264 - RR42_RS08990 0.88 +1.1 1,889,348 + +1.3 1,889,348 + -0.3 1,889,419 - +1.3 1,889,426 + +1.3 1,889,452 + +0.2 1,889,475 - -0.6 1,889,489 + +0.4 1,889,489 + +0.3 1,889,489 + -0.8 1,889,489 + +1.0 1,889,490 - -0.1 1,889,490 - -0.9 1,889,490 - -1.7 1,889,490 - -2.4 1,889,569 + +0.8 1,889,801 + RR42_RS08995 0.33 -0.0 1,889,801 + RR42_RS08995 0.33 -2.3 1,889,802 - RR42_RS08995 0.33 -0.8 1,889,802 - RR42_RS08995 0.33 -0.2 1,889,884 + RR42_RS08995 0.50 -0.8 1,890,130 - -0.0 1,890,171 + +2.1 1,890,171 + -0.0 1,890,172 - +1.0 1,890,232 + -0.9 1,890,232 + +0.0 1,890,233 - +0.1 1,890,233 - +0.9 1,890,259 - -0.6 1,890,259 - +0.4 1,890,269 + -0.5 1,890,269 + -1.0 1,890,269 + +0.1 1,890,269 + +0.3 1,890,269 + +1.1 1,890,269 + +0.5 1,890,269 + -0.6 1,890,270 - -0.3 1,890,270 - +0.5 1,890,270 - -0.2 1,890,291 + +0.8 1,890,291 + +0.1 1,890,291 + +0.5 1,890,292 - +1.0 1,890,292 - -0.0 1,890,292 - -0.0 1,890,292 - +0.5
Or see this region's nucleotide sequence