Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06225

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06220 and RR42_RS06225 are separated by 221 nucleotidesRR42_RS06225 and RR42_RS06230 are separated by 141 nucleotidesRR42_RS06230 and RR42_RS06235 are separated by 48 nucleotides RR42_RS06220: RR42_RS06220 - ferredoxin-NADP reductase, at 1,365,411 to 1,366,517 _RS06220 RR42_RS06225: RR42_RS06225 - phosphoesterase, at 1,366,739 to 1,367,584 _RS06225 RR42_RS06230: RR42_RS06230 - hypothetical protein, at 1,367,726 to 1,368,349 _RS06230 RR42_RS06235: RR42_RS06235 - peptidase M50, at 1,368,398 to 1,369,063 _RS06235 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1at 1365.896 kb on + strand, within RR42_RS06220at 1365.897 kb on - strand, within RR42_RS06220at 1366.006 kb on + strand, within RR42_RS06220at 1366.006 kb on + strand, within RR42_RS06220at 1366.007 kb on - strand, within RR42_RS06220at 1366.007 kb on - strand, within RR42_RS06220at 1366.007 kb on - strand, within RR42_RS06220at 1366.306 kb on + strand, within RR42_RS06220at 1366.307 kb on - strand, within RR42_RS06220at 1366.307 kb on - strand, within RR42_RS06220at 1366.307 kb on - strand, within RR42_RS06220at 1366.581 kb on + strandat 1366.581 kb on + strandat 1366.581 kb on + strandat 1366.582 kb on - strandat 1366.582 kb on - strandat 1366.584 kb on - strandat 1366.584 kb on - strandat 1366.680 kb on + strandat 1366.683 kb on + strandat 1366.683 kb on + strandat 1366.684 kb on - strandat 1366.727 kb on + strandat 1366.727 kb on + strandat 1366.727 kb on + strandat 1366.728 kb on - strandat 1366.728 kb on - strandat 1366.732 kb on + strandat 1366.928 kb on + strand, within RR42_RS06225at 1366.928 kb on + strand, within RR42_RS06225at 1366.928 kb on + strand, within RR42_RS06225at 1366.928 kb on + strand, within RR42_RS06225at 1366.929 kb on - strand, within RR42_RS06225at 1366.978 kb on + strand, within RR42_RS06225at 1366.979 kb on - strand, within RR42_RS06225at 1366.979 kb on - strand, within RR42_RS06225at 1366.979 kb on - strand, within RR42_RS06225at 1367.222 kb on + strand, within RR42_RS06225at 1367.246 kb on + strand, within RR42_RS06225at 1367.337 kb on - strand, within RR42_RS06225at 1367.342 kb on + strand, within RR42_RS06225at 1367.426 kb on - strand, within RR42_RS06225at 1367.447 kb on + strand, within RR42_RS06225at 1367.448 kb on - strand, within RR42_RS06225at 1367.468 kb on + strand, within RR42_RS06225at 1367.469 kb on - strand, within RR42_RS06225at 1367.582 kb on + strandat 1367.736 kb on - strandat 1368.015 kb on - strand, within RR42_RS06230at 1368.015 kb on - strand, within RR42_RS06230at 1368.384 kb on + strandat 1368.384 kb on + strandat 1368.384 kb on + strandat 1368.385 kb on - strandat 1368.385 kb on - strandat 1368.385 kb on - strandat 1368.482 kb on + strand, within RR42_RS06235at 1368.553 kb on + strand, within RR42_RS06235

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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1,365,896 + RR42_RS06220 0.44 +0.2
1,365,897 - RR42_RS06220 0.44 -0.4
1,366,006 + RR42_RS06220 0.54 -0.7
1,366,006 + RR42_RS06220 0.54 +0.4
1,366,007 - RR42_RS06220 0.54 -0.7
1,366,007 - RR42_RS06220 0.54 -0.9
1,366,007 - RR42_RS06220 0.54 +0.9
1,366,306 + RR42_RS06220 0.81 +1.1
1,366,307 - RR42_RS06220 0.81 -1.3
1,366,307 - RR42_RS06220 0.81 +0.8
1,366,307 - RR42_RS06220 0.81 -1.0
1,366,581 + +0.3
1,366,581 + -1.0
1,366,581 + -0.9
1,366,582 - +0.1
1,366,582 - +0.5
1,366,584 - -0.4
1,366,584 - -0.7
1,366,680 + -1.0
1,366,683 + -1.0
1,366,683 + -0.9
1,366,684 - +1.4
1,366,727 + +0.3
1,366,727 + -0.1
1,366,727 + -0.8
1,366,728 - +0.1
1,366,728 - +0.6
1,366,732 + -0.1
1,366,928 + RR42_RS06225 0.22 +0.0
1,366,928 + RR42_RS06225 0.22 -1.8
1,366,928 + RR42_RS06225 0.22 -1.2
1,366,928 + RR42_RS06225 0.22 -2.2
1,366,929 - RR42_RS06225 0.22 -0.4
1,366,978 + RR42_RS06225 0.28 -1.3
1,366,979 - RR42_RS06225 0.28 -0.8
1,366,979 - RR42_RS06225 0.28 -0.3
1,366,979 - RR42_RS06225 0.28 +0.1
1,367,222 + RR42_RS06225 0.57 -0.9
1,367,246 + RR42_RS06225 0.60 -1.0
1,367,337 - RR42_RS06225 0.71 -0.4
1,367,342 + RR42_RS06225 0.71 -0.4
1,367,426 - RR42_RS06225 0.81 -1.2
1,367,447 + RR42_RS06225 0.84 -1.1
1,367,448 - RR42_RS06225 0.84 -0.7
1,367,468 + RR42_RS06225 0.86 -1.3
1,367,469 - RR42_RS06225 0.86 -1.4
1,367,582 + -1.3
1,367,736 - -1.0
1,368,015 - RR42_RS06230 0.46 -0.3
1,368,015 - RR42_RS06230 0.46 -0.3
1,368,384 + -0.2
1,368,384 + +0.2
1,368,384 + -1.8
1,368,385 - -0.4
1,368,385 - -0.3
1,368,385 - -0.1
1,368,482 + RR42_RS06235 0.13 -1.1
1,368,553 + RR42_RS06235 0.23 -0.3

Or see this region's nucleotide sequence