Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06210

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.005 mg/ml
1,361,573	+				+0.1
1,361,574	-				-0.2
1,361,574	-				+1.1
1,361,591	+				-0.7
1,361,591	+				+0.2
1,361,591	+				+0.6
1,361,592	-				-0.3
1,361,592	-				+0.1
1,361,687	-		RR42_RS06205	0.34	+0.1
1,361,770	-		RR42_RS06205	0.57	-1.7
1,361,804	+		RR42_RS06205	0.67	+0.2
1,361,804	+		RR42_RS06205	0.67	+0.4
1,361,804	+		RR42_RS06205	0.67	+0.5
1,361,805	-		RR42_RS06205	0.67	-0.3
1,361,805	-		RR42_RS06205	0.67	-0.1
1,361,990	-				-0.5
1,362,020	+				-0.4
1,362,020	+				+0.0
1,362,097	+				-1.6
1,362,098	-				-0.5
1,362,125	-				-0.3
1,362,126	+				-1.1
1,362,126	+				-0.4
1,362,142	-				+0.8
1,362,280	+				-1.7
1,362,281	-				-0.2
1,362,281	-				-0.3
1,362,306	+				+0.1
1,362,490	+				+0.6
1,362,491	-				+0.0
1,362,602	-				-0.6
1,362,862	+		RR42_RS06210	0.22	+0.2
1,362,928	+		RR42_RS06210	0.25	+0.1
1,362,928	+		RR42_RS06210	0.25	-0.3
1,362,929	-		RR42_RS06210	0.25	-0.4
1,362,929	-		RR42_RS06210	0.25	-0.5
1,362,929	-		RR42_RS06210	0.25	-1.2
1,362,961	+		RR42_RS06210	0.27	-1.3
1,362,962	-		RR42_RS06210	0.27	-0.1
1,363,168	+		RR42_RS06210	0.39	-0.4
1,363,168	+		RR42_RS06210	0.39	-2.0
1,363,168	+		RR42_RS06210	0.39	+1.1
1,363,169	-		RR42_RS06210	0.39	+0.8
1,363,169	-		RR42_RS06210	0.39	-0.1
1,363,169	-		RR42_RS06210	0.39	+0.6
1,363,169	-		RR42_RS06210	0.39	+0.6
1,363,169	-		RR42_RS06210	0.39	+0.8
1,363,292	-		RR42_RS06210	0.46	-0.6
1,363,292	-		RR42_RS06210	0.46	+0.7
1,363,355	+		RR42_RS06210	0.50	-0.5
1,363,355	+		RR42_RS06210	0.50	+1.1
1,363,356	-		RR42_RS06210	0.50	-0.8
1,363,418	-		RR42_RS06210	0.54	-1.2
1,363,441	+		RR42_RS06210	0.55	-0.2
1,363,442	-		RR42_RS06210	0.55	-1.0
1,363,564	-		RR42_RS06210	0.62	-0.4
1,363,621	+		RR42_RS06210	0.65	+2.7
1,363,621	+		RR42_RS06210	0.65	-0.0
1,363,621	+		RR42_RS06210	0.65	+0.9
1,363,622	-		RR42_RS06210	0.65	+0.8
1,363,622	-		RR42_RS06210	0.65	-1.0
1,363,622	-		RR42_RS06210	0.65	-0.1
1,363,622	-		RR42_RS06210	0.65	+0.2
1,363,900	+		RR42_RS06210	0.81	-1.3
1,363,901	-		RR42_RS06210	0.81	-0.1
1,363,901	-		RR42_RS06210	0.81	-1.0
1,363,911	-		RR42_RS06210	0.82	-1.1
1,363,911	-		RR42_RS06210	0.82	+0.6
1,363,920	+		RR42_RS06210	0.83	+0.9
1,363,920	+		RR42_RS06210	0.83	-0.3
1,363,921	-		RR42_RS06210	0.83	-0.7
1,364,029	+		RR42_RS06210	0.89	+1.7
1,364,029	+		RR42_RS06210	0.89	-0.3
1,364,035	+		RR42_RS06210	0.89	-1.0
1,364,172	+				+0.4
1,364,173	-				-0.2
1,364,183	-				+1.1
1,364,273	+				+0.1
1,364,273	+				-1.0
1,364,275	+				-0.5
1,364,276	-				-0.0
1,364,382	+				-0.2
1,364,382	+				+0.4
1,364,383	-				+0.8
1,364,383	-				-1.9
1,364,406	+				-1.0
1,364,407	-				-0.4
1,364,427	+				+1.5
1,364,427	+				-0.3
1,364,427	+				+0.1
1,364,427	+				+0.5
1,364,428	-				-0.5
1,364,428	-				-1.1
1,364,428	-				+1.1
1,364,589	+		RR42_RS06215	0.24	+0.6
1,364,589	+		RR42_RS06215	0.24	+0.1
1,364,614	+		RR42_RS06215	0.27	-2.3
1,364,614	+		RR42_RS06215	0.27	+0.8
1,364,614	+		RR42_RS06215	0.27	-0.1
1,364,615	-		RR42_RS06215	0.27	+0.6
1,364,629	+		RR42_RS06215	0.29	+0.8
1,364,629	+		RR42_RS06215	0.29	+0.1
1,364,629	+		RR42_RS06215	0.29	-0.8
1,364,630	-		RR42_RS06215	0.29	-0.4
1,364,725	+		RR42_RS06215	0.39	-0.4
1,364,726	-		RR42_RS06215	0.39	+0.1
1,364,866	+		RR42_RS06215	0.55	+0.2
1,364,866	+		RR42_RS06215	0.55	-0.7
1,364,867	-		RR42_RS06215	0.55	-0.3
1,364,876	+		RR42_RS06215	0.56	-1.0
1,364,876	+		RR42_RS06215	0.56	-0.2
1,364,987	+		RR42_RS06215	0.69	+0.7
1,364,987	+		RR42_RS06215	0.69	+0.6
1,364,987	+				+0.6
1,364,987	+		RR42_RS06215	0.69	-0.1
1,364,988	-		RR42_RS06215	0.69	-0.2
1,365,117	+		RR42_RS06215	0.83	-0.1
1,365,118	-		RR42_RS06215	0.83	+0.3
1,365,118	-		RR42_RS06215	0.83	-1.6
1,365,207	+				-0.7
1,365,207	+				-0.8