Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04380

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04375 and RR42_RS04380 are separated by 85 nucleotidesRR42_RS04380 and RR42_RS04385 are separated by 137 nucleotides RR42_RS04375: RR42_RS04375 - magnesium transporter, at 973,188 to 974,501 _RS04375 RR42_RS04380: RR42_RS04380 - LysR family transcriptional regulator, at 974,587 to 975,540 _RS04380 RR42_RS04385: RR42_RS04385 - amino acid dehydrogenase, at 975,678 to 976,940 _RS04385 Position (kb) 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2 3at 973.732 kb on + strand, within RR42_RS04375at 974.086 kb on - strand, within RR42_RS04375at 974.086 kb on - strand, within RR42_RS04375at 974.288 kb on + strand, within RR42_RS04375at 974.501 kb on + strandat 974.501 kb on + strandat 974.501 kb on + strandat 974.501 kb on + strandat 974.502 kb on - strandat 974.502 kb on - strandat 974.502 kb on - strandat 974.554 kb on + strandat 974.554 kb on + strandat 974.593 kb on - strandat 974.861 kb on + strand, within RR42_RS04380at 974.862 kb on - strand, within RR42_RS04380at 974.862 kb on - strand, within RR42_RS04380at 975.169 kb on + strand, within RR42_RS04380at 975.169 kb on + strand, within RR42_RS04380at 975.326 kb on + strand, within RR42_RS04380at 975.347 kb on + strand, within RR42_RS04380at 975.591 kb on - strandat 975.591 kb on - strandat 975.602 kb on + strandat 975.602 kb on + strandat 975.603 kb on - strandat 975.634 kb on + strandat 975.822 kb on + strand, within RR42_RS04385at 975.822 kb on + strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.823 kb on - strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.824 kb on + strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.825 kb on - strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.828 kb on + strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.829 kb on - strand, within RR42_RS04385at 975.868 kb on + strand, within RR42_RS04385at 976.144 kb on - strand, within RR42_RS04385at 976.394 kb on + strandat 976.394 kb on + strand, within RR42_RS04385at 976.395 kb on - strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.506 kb on + strand, within RR42_RS04385at 976.507 kb on - strand, within RR42_RS04385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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973,732 + RR42_RS04375 0.41 -0.1
974,086 - RR42_RS04375 0.68 +0.3
974,086 - RR42_RS04375 0.68 -0.3
974,288 + RR42_RS04375 0.84 -0.9
974,501 + +0.0
974,501 + -0.1
974,501 + +0.7
974,501 + -0.2
974,502 - -1.1
974,502 - +0.4
974,502 - -0.5
974,554 + +0.1
974,554 + +1.0
974,593 - -1.1
974,861 + RR42_RS04380 0.29 +0.0
974,862 - RR42_RS04380 0.29 +1.1
974,862 - RR42_RS04380 0.29 +1.1
975,169 + RR42_RS04380 0.61 -0.2
975,169 + RR42_RS04380 0.61 -0.5
975,326 + RR42_RS04380 0.77 -0.4
975,347 + RR42_RS04380 0.80 -0.7
975,591 - +1.0
975,591 - +0.1
975,602 + +0.1
975,602 + +0.4
975,603 - +1.1
975,634 + -0.3
975,822 + RR42_RS04385 0.11 -0.1
975,822 + RR42_RS04385 0.11 -0.1
975,823 - RR42_RS04385 0.11 -0.7
975,823 - RR42_RS04385 0.11 -1.2
975,823 - RR42_RS04385 0.11 +0.9
975,823 - RR42_RS04385 0.11 +0.1
975,824 + RR42_RS04385 0.12 -0.3
975,824 + RR42_RS04385 0.12 +0.3
975,824 + RR42_RS04385 0.12 -0.1
975,824 + RR42_RS04385 0.12 -0.4
975,824 + RR42_RS04385 0.12 +0.2
975,824 + RR42_RS04385 0.12 -0.7
975,825 - RR42_RS04385 0.12 +1.3
975,825 - RR42_RS04385 0.12 +0.9
975,825 - RR42_RS04385 0.12 -0.5
975,825 - RR42_RS04385 0.12 -2.6
975,828 + RR42_RS04385 0.12 +0.5
975,828 + RR42_RS04385 0.12 -0.2
975,828 + RR42_RS04385 0.12 -0.0
975,828 + RR42_RS04385 0.12 -0.2
975,828 + RR42_RS04385 0.12 -0.2
975,828 + RR42_RS04385 0.12 -0.1
975,828 + RR42_RS04385 0.12 +0.4
975,828 + RR42_RS04385 0.12 +0.5
975,828 + RR42_RS04385 0.12 +0.1
975,828 + RR42_RS04385 0.12 -0.4
975,828 + RR42_RS04385 0.12 +0.8
975,828 + RR42_RS04385 0.12 +0.2
975,829 - RR42_RS04385 0.12 +0.2
975,829 - RR42_RS04385 0.12 -0.3
975,829 - RR42_RS04385 0.12 -0.2
975,829 - RR42_RS04385 0.12 +1.2
975,829 - RR42_RS04385 0.12 -1.6
975,829 - RR42_RS04385 0.12 -0.6
975,829 - RR42_RS04385 0.12 -1.0
975,829 - RR42_RS04385 0.12 -0.2
975,829 - RR42_RS04385 0.12 -0.2
975,829 - RR42_RS04385 0.12 -0.2
975,868 + RR42_RS04385 0.15 -0.8
976,144 - RR42_RS04385 0.37 -0.2
976,394 + +3.2
976,394 + RR42_RS04385 0.57 -1.9
976,395 - RR42_RS04385 0.57 +0.9
976,506 + RR42_RS04385 0.66 +0.0
976,506 + RR42_RS04385 0.66 +1.2
976,507 - RR42_RS04385 0.66 -0.2

Or see this region's nucleotide sequence