Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03990 and RR42_RS03995 are separated by 577 nucleotides RR42_RS03995 and RR42_RS04000 are separated by 631 nucleotides
RR42_RS03990: RR42_RS03990 - aspartate:proton symporter Glt <small>(from data)</small>, at 881,471 to 882,781
_RS03990
RR42_RS03995: RR42_RS03995 - diguanylate cyclase, at 883,359 to 886,721
_RS03995
RR42_RS04000: RR42_RS04000 - (2Fe-2S)-binding protein, at 887,353 to 887,811
_RS04000
Position (kb) 883
884
885
886
887 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 883.086 kb on + strand at 883.086 kb on + strand at 883.110 kb on - strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.432 kb on + strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.433 kb on - strand at 883.444 kb on + strand at 883.445 kb on - strand at 883.612 kb on + strand at 883.612 kb on + strand at 883.613 kb on - strand at 883.954 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.218 kb on + strand, within RR42_RS03995 at 884.219 kb on - strand at 884.219 kb on - strand, within RR42_RS03995 at 884.226 kb on + strand, within RR42_RS03995 at 884.308 kb on + strand, within RR42_RS03995 at 884.462 kb on - strand, within RR42_RS03995 at 884.885 kb on + strand, within RR42_RS03995 at 884.886 kb on - strand, within RR42_RS03995 at 885.042 kb on - strand, within RR42_RS03995 at 885.402 kb on + strand, within RR42_RS03995 at 885.489 kb on + strand, within RR42_RS03995 at 885.490 kb on - strand, within RR42_RS03995 at 885.566 kb on - strand, within RR42_RS03995 at 885.605 kb on - strand, within RR42_RS03995 at 885.716 kb on - strand, within RR42_RS03995 at 885.985 kb on - strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on + strand, within RR42_RS03995 at 886.075 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.076 kb on - strand, within RR42_RS03995 at 886.179 kb on + strand, within RR42_RS03995 at 886.262 kb on - strand, within RR42_RS03995 at 886.369 kb on - strand, within RR42_RS03995 at 886.633 kb on - strand at 886.656 kb on + strand at 886.656 kb on + strand at 886.801 kb on - strand at 886.801 kb on - strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.811 kb on + strand at 886.812 kb on - strand at 886.812 kb on - strand at 886.814 kb on - strand at 886.844 kb on - strand at 886.981 kb on + strand at 886.982 kb on - strand at 886.999 kb on - strand at 887.211 kb on + strand at 887.211 kb on + strand at 887.212 kb on - strand at 887.227 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.363 kb on + strand at 887.364 kb on - strand at 887.364 kb on - strand at 887.367 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 883,086 + +1.1 883,086 + +0.5 883,110 - -1.9 883,432 + +1.0 883,432 + -1.2 883,432 + -0.8 883,433 - -0.6 883,433 - -0.1 883,433 - +0.9 883,444 + -0.9 883,445 - +0.2 883,612 + -0.6 883,612 + +0.7 883,613 - -1.7 883,954 + RR42_RS03995 0.18 +0.8 884,218 + RR42_RS03995 0.26 -0.3 884,218 + RR42_RS03995 0.26 -0.5 884,219 - +4.6 884,219 - RR42_RS03995 0.26 +0.5 884,226 + RR42_RS03995 0.26 -0.1 884,308 + RR42_RS03995 0.28 +0.1 884,462 - RR42_RS03995 0.33 +0.5 884,885 + RR42_RS03995 0.45 -1.3 884,886 - RR42_RS03995 0.45 +0.4 885,042 - RR42_RS03995 0.50 +0.4 885,402 + RR42_RS03995 0.61 +0.3 885,489 + RR42_RS03995 0.63 -1.8 885,490 - RR42_RS03995 0.63 -1.3 885,566 - RR42_RS03995 0.66 -0.1 885,605 - RR42_RS03995 0.67 +0.3 885,716 - RR42_RS03995 0.70 +0.1 885,985 - RR42_RS03995 0.78 +0.5 886,075 + RR42_RS03995 0.81 -0.6 886,075 + RR42_RS03995 0.81 +0.3 886,075 + RR42_RS03995 0.81 -0.5 886,075 - RR42_RS03995 0.81 +0.0 886,076 - RR42_RS03995 0.81 -0.3 886,076 - RR42_RS03995 0.81 -0.5 886,076 - RR42_RS03995 0.81 +0.5 886,076 - RR42_RS03995 0.81 -0.1 886,076 - RR42_RS03995 0.81 -0.7 886,076 - RR42_RS03995 0.81 +0.3 886,179 + RR42_RS03995 0.84 -0.4 886,262 - RR42_RS03995 0.86 +0.4 886,369 - RR42_RS03995 0.90 +0.4 886,633 - +0.1 886,656 + +0.6 886,656 + +0.2 886,801 - -0.1 886,801 - +0.7 886,811 + -0.6 886,811 + -0.1 886,811 + +0.4 886,812 - +0.1 886,812 - +0.8 886,814 - +0.0 886,844 - -0.4 886,981 + -0.9 886,982 - -0.1 886,999 - +0.8 887,211 + -0.3 887,211 + +0.4 887,212 - +0.1 887,227 + +0.3 887,363 + +1.0 887,363 + -0.4 887,363 + +1.9 887,363 + -1.5 887,363 + -0.5 887,363 + +0.2 887,364 - -0.0 887,364 - +0.9 887,367 + -1.0
Or see this region's nucleotide sequence