Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides RR42_RS03835 and RR42_RS03840 are separated by 112 nucleotides
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
RR42_RS03840: RR42_RS03840 - molybdate ABC transporter substrate-binding protein, at 846,920 to 847,711
_RS03840
Position (kb) 846
847 Strain fitness (log2 ratio) -1
0
1
2 at 845.436 kb on - strand at 845.599 kb on + strand, within RR42_RS03830 at 845.864 kb on + strand, within RR42_RS03830 at 845.879 kb on + strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 846.110 kb on - strand at 846.110 kb on - strand at 846.137 kb on + strand at 846.263 kb on + strand, within RR42_RS03835 at 846.263 kb on + strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.437 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.550 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.624 kb on - strand, within RR42_RS03835 at 846.822 kb on + strand at 846.823 kb on - strand at 846.915 kb on - strand at 846.922 kb on - strand at 846.935 kb on + strand at 847.149 kb on + strand, within RR42_RS03840 at 847.150 kb on - strand, within RR42_RS03840 at 847.237 kb on + strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.238 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.240 kb on - strand, within RR42_RS03840 at 847.542 kb on + strand, within RR42_RS03840 at 847.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 845,436 - -1.1 845,599 + RR42_RS03830 0.27 -0.4 845,864 + RR42_RS03830 0.63 -0.4 845,879 + RR42_RS03830 0.65 +1.4 845,880 - RR42_RS03830 0.65 -1.4 845,880 - RR42_RS03830 0.65 -0.5 846,110 - -0.5 846,110 - -0.0 846,137 + -1.0 846,263 + RR42_RS03835 0.19 +0.8 846,263 + RR42_RS03835 0.19 +0.7 846,264 - RR42_RS03835 0.19 -0.5 846,264 - RR42_RS03835 0.19 -0.4 846,437 - RR42_RS03835 0.45 +1.9 846,550 - RR42_RS03835 0.62 -0.5 846,550 - RR42_RS03835 0.62 -0.3 846,624 - RR42_RS03835 0.73 +0.3 846,624 - RR42_RS03835 0.73 +1.7 846,822 + -1.2 846,823 - -0.3 846,915 - -0.5 846,922 - -0.8 846,935 + -1.1 847,149 + RR42_RS03840 0.29 -0.1 847,150 - RR42_RS03840 0.29 -0.0 847,237 + RR42_RS03840 0.40 +0.0 847,238 - RR42_RS03840 0.40 -0.0 847,238 - RR42_RS03840 0.40 -0.8 847,238 - RR42_RS03840 0.40 -0.0 847,240 - RR42_RS03840 0.40 +0.6 847,240 - RR42_RS03840 0.40 +0.6 847,542 + RR42_RS03840 0.79 -0.7 847,774 - -0.3
Or see this region's nucleotide sequence