Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02580

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02575 and RR42_RS02580 are separated by 63 nucleotidesRR42_RS02580 and RR42_RS02585 are separated by 11 nucleotidesRR42_RS02585 and RR42_RS02590 overlap by 4 nucleotides RR42_RS02575: RR42_RS02575 - ABC transporter, at 579,154 to 580,053 _RS02575 RR42_RS02580: RR42_RS02580 - amino acid ABC transporter permease, at 580,117 to 580,845 _RS02580 RR42_RS02585: RR42_RS02585 - amino acid ABC transporter permease, at 580,857 to 581,540 _RS02585 RR42_RS02590: RR42_RS02590 - amino acid ABC transporter ATP-binding protein, at 581,537 to 582,271 _RS02590 Position (kb) 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1at 579.153 kb on + strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.154 kb on - strandat 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.271 kb on - strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.307 kb on + strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.308 kb on - strand, within RR42_RS02575at 579.343 kb on + strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.344 kb on - strand, within RR42_RS02575at 579.844 kb on + strand, within RR42_RS02575at 579.845 kb on - strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 579.940 kb on + strand, within RR42_RS02575at 580.054 kb on + strandat 580.055 kb on - strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.123 kb on + strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.124 kb on - strandat 580.142 kb on + strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.143 kb on - strandat 580.174 kb on + strandat 580.174 kb on + strandat 580.175 kb on - strandat 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.316 kb on - strand, within RR42_RS02580at 580.332 kb on + strand, within RR42_RS02580at 580.333 kb on - strand, within RR42_RS02580at 580.335 kb on + strand, within RR42_RS02580at 580.570 kb on + strand, within RR42_RS02580at 580.571 kb on - strand, within RR42_RS02580at 580.576 kb on + strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.577 kb on - strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.583 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.714 kb on + strand, within RR42_RS02580at 580.715 kb on - strand, within RR42_RS02580at 580.729 kb on + strand, within RR42_RS02580at 580.759 kb on + strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.760 kb on - strand, within RR42_RS02580at 580.843 kb on + strandat 580.843 kb on + strandat 580.843 kb on + strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.844 kb on - strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.863 kb on + strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.864 kb on - strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.865 kb on + strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 580.866 kb on - strandat 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.037 kb on + strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.038 kb on - strand, within RR42_RS02585at 581.193 kb on + strand, within RR42_RS02585at 581.194 kb on - strand, within RR42_RS02585at 581.194 kb on - strand, within RR42_RS02585at 581.196 kb on + strand, within RR42_RS02585at 581.197 kb on - strand, within RR42_RS02585at 581.197 kb on - strand, within RR42_RS02585at 581.274 kb on + strand, within RR42_RS02585at 581.367 kb on - strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.379 kb on + strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.380 kb on - strand, within RR42_RS02585at 581.416 kb on - strand, within RR42_RS02585at 581.475 kb on + strandat 581.476 kb on - strandat 581.476 kb on - strandat 581.483 kb on + strandat 581.536 kb on + strandat 581.536 kb on + strandat 581.536 kb on + strandat 581.568 kb on - strandat 581.568 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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579,153 + -0.6
579,154 - -0.5
579,154 - -1.4
579,154 - +0.3
579,271 - RR42_RS02575 0.13 -0.5
579,271 - RR42_RS02575 0.13 +0.7
579,271 - RR42_RS02575 0.13 -0.5
579,307 + RR42_RS02575 0.17 +0.6
579,307 + RR42_RS02575 0.17 +0.0
579,308 - RR42_RS02575 0.17 -0.3
579,308 - RR42_RS02575 0.17 -0.8
579,343 + RR42_RS02575 0.21 +0.4
579,344 - RR42_RS02575 0.21 -0.1
579,344 - RR42_RS02575 0.21 +0.4
579,844 + RR42_RS02575 0.77 -0.1
579,845 - RR42_RS02575 0.77 -1.9
579,940 + RR42_RS02575 0.87 +0.7
579,940 + RR42_RS02575 0.87 +1.0
579,940 + RR42_RS02575 0.87 +0.2
580,054 + +1.0
580,055 - -0.7
580,123 + -0.6
580,123 + +0.2
580,123 + -0.3
580,124 - +0.0
580,124 - -0.4
580,124 - +0.3
580,142 + +0.1
580,143 - +0.8
580,143 - -0.6
580,143 - +0.8
580,174 + -0.8
580,174 + -0.0
580,175 - -1.0
580,316 - RR42_RS02580 0.27 -1.0
580,316 - RR42_RS02580 0.27 +0.0
580,316 - RR42_RS02580 0.27 -1.1
580,332 + RR42_RS02580 0.29 +0.5
580,333 - RR42_RS02580 0.30 -0.5
580,335 + RR42_RS02580 0.30 -0.1
580,570 + RR42_RS02580 0.62 +1.0
580,571 - RR42_RS02580 0.62 +0.2
580,576 + RR42_RS02580 0.63 -0.4
580,577 - RR42_RS02580 0.63 -0.4
580,577 - RR42_RS02580 0.63 +0.2
580,583 + RR42_RS02580 0.64 +0.1
580,583 + RR42_RS02580 0.64 -1.7
580,714 + RR42_RS02580 0.82 -0.7
580,714 + RR42_RS02580 0.82 -0.9
580,715 - RR42_RS02580 0.82 +0.8
580,729 + RR42_RS02580 0.84 +0.7
580,759 + RR42_RS02580 0.88 +0.3
580,760 - RR42_RS02580 0.88 -0.4
580,760 - RR42_RS02580 0.88 -0.9
580,760 - RR42_RS02580 0.88 -0.4
580,843 + +0.5
580,843 + -1.0
580,843 + -1.4
580,844 - -2.8
580,844 - -0.2
580,844 - -1.8
580,863 + +1.1
580,863 + -0.5
580,863 + +0.3
580,863 + -0.1
580,864 - -1.0
580,864 - +0.8
580,864 - -0.5
580,864 - -0.4
580,864 - -0.3
580,865 + -0.3
580,865 + +0.7
580,865 + +0.1
580,865 + +1.3
580,865 + -0.3
580,865 + -0.3
580,866 - +0.8
580,866 - -0.7
580,866 - -1.0
580,866 - -0.2
580,866 - -0.8
580,866 - -0.9
580,866 - -0.1
580,866 - +0.1
581,037 + RR42_RS02585 0.26 -0.6
581,037 + RR42_RS02585 0.26 -0.2
581,037 + RR42_RS02585 0.26 +0.2
581,038 - RR42_RS02585 0.26 -0.2
581,038 - RR42_RS02585 0.26 +0.0
581,193 + RR42_RS02585 0.49 +0.1
581,194 - RR42_RS02585 0.49 +0.2
581,194 - RR42_RS02585 0.49 -0.9
581,196 + RR42_RS02585 0.50 -0.2
581,197 - RR42_RS02585 0.50 +0.5
581,197 - RR42_RS02585 0.50 -0.0
581,274 + RR42_RS02585 0.61 +0.3
581,367 - RR42_RS02585 0.75 +0.4
581,379 + RR42_RS02585 0.76 -0.1
581,379 + RR42_RS02585 0.76 -0.7
581,379 + RR42_RS02585 0.76 -0.4
581,380 - RR42_RS02585 0.76 +0.0
581,380 - RR42_RS02585 0.76 -0.9
581,380 - RR42_RS02585 0.76 +0.6
581,380 - RR42_RS02585 0.76 -0.2
581,416 - RR42_RS02585 0.82 -0.1
581,475 + -1.3
581,476 - +1.1
581,476 - -0.2
581,483 + -0.8
581,536 + -1.4
581,536 + -0.2
581,536 + +0.4
581,568 - -0.6
581,568 - +0.2

Or see this region's nucleotide sequence