Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02165 and RR42_RS02170 are separated by 215 nucleotides RR42_RS02170 and RR42_RS02175 are separated by 20 nucleotides
RR42_RS02165: RR42_RS02165 - LysR family transcriptional regulator, at 481,318 to 482,256
_RS02165
RR42_RS02170: RR42_RS02170 - hypothetical protein, at 482,472 to 483,209
_RS02170
RR42_RS02175: RR42_RS02175 - acetolactate synthase, at 483,230 to 484,855
_RS02175
Position (kb) 482
483
484 Strain fitness (log2 ratio) -1
0
1
2
3 at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.810 kb on - strand, within RR42_RS02165 at 481.829 kb on - strand, within RR42_RS02165 at 481.914 kb on - strand, within RR42_RS02165 at 482.261 kb on - strand at 482.293 kb on + strand at 482.360 kb on - strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.397 kb on + strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.398 kb on - strand at 482.399 kb on - strand at 482.435 kb on + strand at 482.521 kb on - strand at 482.521 kb on - strand at 482.522 kb on + strand at 482.869 kb on + strand, within RR42_RS02170 at 482.869 kb on + strand, within RR42_RS02170 at 482.872 kb on + strand, within RR42_RS02170 at 482.916 kb on + strand, within RR42_RS02170 at 482.917 kb on - strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 482.925 kb on + strand, within RR42_RS02170 at 483.033 kb on + strand, within RR42_RS02170 at 483.034 kb on - strand, within RR42_RS02170 at 483.034 kb on - strand, within RR42_RS02170 at 483.041 kb on + strand, within RR42_RS02170 at 483.093 kb on + strand, within RR42_RS02170 at 483.358 kb on - strand at 483.387 kb on + strand at 483.433 kb on - strand, within RR42_RS02175 at 483.454 kb on - strand, within RR42_RS02175 at 484.073 kb on + strand, within RR42_RS02175 at 484.073 kb on + strand, within RR42_RS02175 at 484.074 kb on - strand, within RR42_RS02175 at 484.074 kb on - strand, within RR42_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml remove 481,810 - RR42_RS02165 0.52 -0.6 481,810 - RR42_RS02165 0.52 +0.0 481,810 - RR42_RS02165 0.52 -0.4 481,829 - RR42_RS02165 0.54 +0.4 481,914 - RR42_RS02165 0.63 -0.5 482,261 - -0.4 482,293 + -1.2 482,360 - +0.2 482,397 + -1.4 482,397 + -0.3 482,397 + -0.1 482,397 + +0.2 482,398 - -0.7 482,398 - +1.4 482,398 - -0.3 482,398 - +0.2 482,398 - -0.5 482,399 - +0.7 482,435 + -0.5 482,521 - -0.6 482,521 - -0.0 482,522 + -1.1 482,869 + RR42_RS02170 0.54 +0.4 482,869 + RR42_RS02170 0.54 -0.0 482,872 + RR42_RS02170 0.54 +0.5 482,916 + RR42_RS02170 0.60 -0.7 482,917 - RR42_RS02170 0.60 +0.1 482,925 + RR42_RS02170 0.61 -0.2 482,925 + RR42_RS02170 0.61 -0.4 482,925 + RR42_RS02170 0.61 +0.2 483,033 + RR42_RS02170 0.76 -0.8 483,034 - RR42_RS02170 0.76 +0.1 483,034 - RR42_RS02170 0.76 +0.2 483,041 + RR42_RS02170 0.77 -0.6 483,093 + RR42_RS02170 0.84 -0.5 483,358 - +0.1 483,387 + -0.6 483,433 - RR42_RS02175 0.12 -0.6 483,454 - RR42_RS02175 0.14 -0.9 484,073 + RR42_RS02175 0.52 -0.7 484,073 + RR42_RS02175 0.52 -0.5 484,074 - RR42_RS02175 0.52 +2.8 484,074 - RR42_RS02175 0.52 -0.6
Or see this region's nucleotide sequence