Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01805

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01800 and RR42_RS01805 are separated by 272 nucleotidesRR42_RS01805 and RR42_RS01810 overlap by 1 nucleotides RR42_RS01800: RR42_RS01800 - bacterioferritin, at 409,334 to 409,813 _RS01800 RR42_RS01805: RR42_RS01805 - selenophosphate synthase, at 410,086 to 411,153 _RS01805 RR42_RS01810: RR42_RS01810 - tRNA 2-selenouridine synthase, at 411,153 to 412,277 _RS01810 Position (kb) 410 411 412Strain fitness (log2 ratio) -2 -1 0 1 2at 409.406 kb on + strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.407 kb on - strand, within RR42_RS01800at 409.427 kb on + strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.428 kb on - strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.466 kb on + strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.467 kb on - strand, within RR42_RS01800at 409.648 kb on + strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.649 kb on - strand, within RR42_RS01800at 409.652 kb on + strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.653 kb on - strand, within RR42_RS01800at 409.674 kb on - strand, within RR42_RS01800at 409.778 kb on + strandat 409.778 kb on + strandat 409.779 kb on - strandat 409.779 kb on - strandat 409.779 kb on - strandat 409.811 kb on + strandat 409.811 kb on + strandat 409.811 kb on + strandat 410.002 kb on + strandat 410.003 kb on - strandat 410.003 kb on - strandat 410.113 kb on + strandat 410.114 kb on - strandat 410.114 kb on - strandat 410.245 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.368 kb on + strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.369 kb on - strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.614 kb on + strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805at 410.615 kb on - strand, within RR42_RS01805at 410.881 kb on + strand, within RR42_RS01805at 410.881 kb on + strand, within RR42_RS01805at 410.882 kb on - strand, within RR42_RS01805at 410.929 kb on - strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.932 kb on + strand, within RR42_RS01805at 410.933 kb on - strand, within RR42_RS01805at 411.133 kb on + strandat 411.165 kb on - strandat 411.309 kb on + strand, within RR42_RS01810at 411.310 kb on - strand, within RR42_RS01810at 411.310 kb on - strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.432 kb on + strand, within RR42_RS01810at 411.433 kb on - strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.536 kb on + strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.537 kb on - strand, within RR42_RS01810at 411.812 kb on - strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.864 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.942 kb on + strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810at 411.943 kb on - strand, within RR42_RS01810

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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409,406 + RR42_RS01800 0.15 -1.0
409,407 - RR42_RS01800 0.15 +1.4
409,407 - RR42_RS01800 0.15 -0.1
409,407 - RR42_RS01800 0.15 -1.1
409,427 + RR42_RS01800 0.19 +0.5
409,428 - RR42_RS01800 0.20 +0.6
409,428 - RR42_RS01800 0.20 +0.1
409,466 + RR42_RS01800 0.28 +0.3
409,466 + RR42_RS01800 0.28 -0.0
409,466 + RR42_RS01800 0.28 -0.9
409,467 - RR42_RS01800 0.28 -0.5
409,467 - RR42_RS01800 0.28 -1.8
409,467 - RR42_RS01800 0.28 -0.7
409,648 + RR42_RS01800 0.65 +2.4
409,649 - RR42_RS01800 0.66 -2.2
409,649 - RR42_RS01800 0.66 -1.8
409,649 - RR42_RS01800 0.66 +0.2
409,649 - RR42_RS01800 0.66 -0.9
409,652 + RR42_RS01800 0.66 -0.1
409,653 - RR42_RS01800 0.66 +0.6
409,653 - RR42_RS01800 0.66 -0.0
409,653 - RR42_RS01800 0.66 -0.6
409,674 - RR42_RS01800 0.71 -1.9
409,778 + +0.6
409,778 + +0.9
409,779 - -0.6
409,779 - +0.2
409,779 - +0.7
409,811 + +0.8
409,811 + -1.3
409,811 + -0.2
410,002 + -0.7
410,003 - +0.7
410,003 - -0.8
410,113 + -0.9
410,114 - -0.2
410,114 - +0.5
410,245 + RR42_RS01805 0.15 +1.4
410,368 + RR42_RS01805 0.26 +0.2
410,368 + RR42_RS01805 0.26 -0.6
410,368 + RR42_RS01805 0.26 +0.0
410,368 + RR42_RS01805 0.26 +0.3
410,368 + RR42_RS01805 0.26 -0.2
410,368 + RR42_RS01805 0.26 -0.4
410,369 - RR42_RS01805 0.26 +0.3
410,369 - RR42_RS01805 0.26 +0.2
410,369 - RR42_RS01805 0.26 -0.3
410,369 - RR42_RS01805 0.26 +0.1
410,369 - RR42_RS01805 0.26 +0.6
410,614 + RR42_RS01805 0.49 +0.2
410,614 + RR42_RS01805 0.49 +1.6
410,614 + RR42_RS01805 0.49 -0.4
410,615 - RR42_RS01805 0.50 +0.6
410,615 - RR42_RS01805 0.50 -0.3
410,881 + RR42_RS01805 0.74 +0.2
410,881 + RR42_RS01805 0.74 +0.5
410,882 - RR42_RS01805 0.75 +0.7
410,929 - RR42_RS01805 0.79 +0.1
410,932 + RR42_RS01805 0.79 +1.1
410,932 + RR42_RS01805 0.79 +1.3
410,932 + RR42_RS01805 0.79 +0.7
410,932 + RR42_RS01805 0.79 -0.2
410,932 + RR42_RS01805 0.79 -0.6
410,933 - RR42_RS01805 0.79 +0.4
411,133 + +0.6
411,165 - -1.3
411,309 + RR42_RS01810 0.14 +0.4
411,310 - RR42_RS01810 0.14 +0.2
411,310 - RR42_RS01810 0.14 +0.0
411,432 + RR42_RS01810 0.25 -0.6
411,432 + RR42_RS01810 0.25 +0.3
411,432 + RR42_RS01810 0.25 +1.4
411,432 + RR42_RS01810 0.25 -0.2
411,433 - RR42_RS01810 0.25 -0.2
411,536 + RR42_RS01810 0.34 -0.1
411,536 + RR42_RS01810 0.34 -1.3
411,536 + RR42_RS01810 0.34 +1.9
411,537 - RR42_RS01810 0.34 -0.2
411,537 - RR42_RS01810 0.34 -0.9
411,537 - RR42_RS01810 0.34 +0.1
411,537 - RR42_RS01810 0.34 -1.0
411,812 - RR42_RS01810 0.59 -2.2
411,864 + RR42_RS01810 0.63 -0.2
411,864 + RR42_RS01810 0.63 -0.8
411,864 + RR42_RS01810 0.63 +0.7
411,864 + RR42_RS01810 0.63 -0.6
411,942 + RR42_RS01810 0.70 -0.5
411,942 + RR42_RS01810 0.70 +0.3
411,942 + RR42_RS01810 0.70 +0.3
411,942 + RR42_RS01810 0.70 -0.9
411,942 + RR42_RS01810 0.70 +0.6
411,943 - RR42_RS01810 0.70 -0.2
411,943 - RR42_RS01810 0.70 -0.8
411,943 - RR42_RS01810 0.70 +0.0

Or see this region's nucleotide sequence