Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01460

Experiment: R2A with Polymyxin B sulfate 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01455 and RR42_RS01460 are separated by 120 nucleotidesRR42_RS01460 and RR42_RS01465 are separated by 644 nucleotides RR42_RS01455: RR42_RS01455 - bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase, at 327,154 to 328,515 _RS01455 RR42_RS01460: RR42_RS01460 - glucosamine--fructose-6-phosphate aminotransferase, at 328,636 to 330,474 _RS01460 RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086 _RS01465 Position (kb) 328 329 330 331Strain fitness (log2 ratio) -1 0 1at 330.473 kb on - strandat 330.485 kb on - strandat 330.485 kb on - strandat 330.556 kb on + strandat 330.556 kb on + strandat 330.557 kb on - strandat 330.557 kb on - strandat 330.679 kb on - strandat 330.746 kb on + strandat 330.868 kb on + strandat 330.868 kb on + strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.869 kb on - strandat 330.873 kb on + strandat 330.873 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.005 mg/ml
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330,473 - -0.7
330,485 - -1.2
330,485 - -0.5
330,556 + -1.4
330,556 + -1.5
330,557 - -0.5
330,557 - -0.4
330,679 - -0.0
330,746 + +0.6
330,868 + -0.5
330,868 + +0.2
330,869 - +0.6
330,869 - -0.4
330,869 - -0.2
330,869 - +0.2
330,869 - +0.3
330,873 + -0.1
330,873 + -0.7

Or see this region's nucleotide sequence