Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_651

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_649 and Pf1N1B4_650 are separated by 200 nucleotidesPf1N1B4_650 and Pf1N1B4_651 are separated by 139 nucleotidesPf1N1B4_651 and Pf1N1B4_652 are separated by 45 nucleotides Pf1N1B4_649 - Small-conductance mechanosensitive channel, at 743,011 to 743,853 _649 Pf1N1B4_650 - FIG001943: hypothetical protein YajQ, at 744,054 to 744,539 _650 Pf1N1B4_651 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 744,679 to 745,596 _651 Pf1N1B4_652 - Sensory box histidine kinase, at 745,642 to 747,678 _652 Position (kb) 744 745 746Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 743.770 kb on + strandat 743.771 kb on - strandat 743.784 kb on - strandat 743.919 kb on + strandat 744.004 kb on + strandat 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.116 kb on + strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strandat 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strand, within Pf1N1B4_650at 744.117 kb on - strandat 744.289 kb on + strand, within Pf1N1B4_650at 744.452 kb on - strand, within Pf1N1B4_650at 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.541 kb on + strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.542 kb on - strandat 744.554 kb on - strandat 744.554 kb on - strandat 744.598 kb on - strandat 744.612 kb on + strandat 744.612 kb on + strandat 744.612 kb on + strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.613 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.615 kb on - strandat 744.696 kb on + strandat 744.696 kb on + strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.697 kb on - strandat 744.791 kb on + strand, within Pf1N1B4_651at 744.792 kb on - strand, within Pf1N1B4_651at 744.792 kb on - strand, within Pf1N1B4_651at 744.792 kb on - strandat 744.850 kb on + strand, within Pf1N1B4_651at 744.850 kb on + strand, within Pf1N1B4_651at 744.903 kb on - strand, within Pf1N1B4_651at 744.903 kb on - strand, within Pf1N1B4_651at 744.919 kb on + strand, within Pf1N1B4_651at 744.919 kb on + strand, within Pf1N1B4_651at 745.114 kb on + strand, within Pf1N1B4_651at 745.115 kb on - strand, within Pf1N1B4_651at 745.182 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.438 kb on + strand, within Pf1N1B4_651at 745.439 kb on - strand, within Pf1N1B4_651at 745.439 kb on - strand, within Pf1N1B4_651at 745.477 kb on + strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.478 kb on - strand, within Pf1N1B4_651at 745.490 kb on - strand, within Pf1N1B4_651at 745.629 kb on - strandat 745.747 kb on - strandat 745.759 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.762 kb on + strandat 745.763 kb on - strandat 745.763 kb on - strandat 745.894 kb on + strand, within Pf1N1B4_652at 745.894 kb on + strandat 745.894 kb on + strand, within Pf1N1B4_652at 745.894 kb on + strand, within Pf1N1B4_652at 745.894 kb on + strand, within Pf1N1B4_652at 745.894 kb on + strand, within Pf1N1B4_652at 745.894 kb on + strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.895 kb on - strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strandat 745.896 kb on + strand, within Pf1N1B4_652at 745.896 kb on + strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strandat 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strandat 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.897 kb on - strand, within Pf1N1B4_652at 745.921 kb on + strand, within Pf1N1B4_652at 745.921 kb on + strand, within Pf1N1B4_652at 745.921 kb on + strand, within Pf1N1B4_652at 745.921 kb on + strand, within Pf1N1B4_652at 745.922 kb on - strandat 745.922 kb on - strand, within Pf1N1B4_652at 745.922 kb on - strand, within Pf1N1B4_652at 745.976 kb on + strand, within Pf1N1B4_652at 746.113 kb on + strand, within Pf1N1B4_652at 746.114 kb on - strand, within Pf1N1B4_652at 746.114 kb on - strand, within Pf1N1B4_652at 746.114 kb on - strand, within Pf1N1B4_652at 746.114 kb on - strand, within Pf1N1B4_652at 746.166 kb on - strand, within Pf1N1B4_652at 746.260 kb on + strand, within Pf1N1B4_652at 746.260 kb on + strand, within Pf1N1B4_652at 746.261 kb on - strand, within Pf1N1B4_652at 746.261 kb on - strand, within Pf1N1B4_652at 746.261 kb on - strand, within Pf1N1B4_652at 746.504 kb on - strand, within Pf1N1B4_652at 746.504 kb on - strand, within Pf1N1B4_652at 746.563 kb on + strand, within Pf1N1B4_652at 746.563 kb on + strand, within Pf1N1B4_652at 746.563 kb on + strand, within Pf1N1B4_652at 746.563 kb on + strand, within Pf1N1B4_652at 746.563 kb on + strand, within Pf1N1B4_652at 746.564 kb on - strand, within Pf1N1B4_652at 746.564 kb on - strand, within Pf1N1B4_652at 746.564 kb on - strand, within Pf1N1B4_652at 746.564 kb on - strand, within Pf1N1B4_652at 746.567 kb on + strand, within Pf1N1B4_652

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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743,770 + +0.9
743,771 - +1.0
743,784 - -0.5
743,919 + +0.6
744,004 + -0.0
744,116 + Pf1N1B4_650 0.13 +1.6
744,116 + Pf1N1B4_650 0.13 +0.8
744,116 + Pf1N1B4_650 0.13 +1.0
744,116 + Pf1N1B4_650 0.13 -0.4
744,116 + Pf1N1B4_650 0.13 +0.6
744,116 + Pf1N1B4_650 0.13 +1.6
744,117 - Pf1N1B4_650 0.13 +1.6
744,117 - Pf1N1B4_650 0.13 -0.0
744,117 - Pf1N1B4_650 0.13 +0.7
744,117 - -0.0
744,117 - Pf1N1B4_650 0.13 -0.0
744,117 - Pf1N1B4_650 0.13 +1.6
744,117 - Pf1N1B4_650 0.13 -1.0
744,117 - +1.0
744,289 + Pf1N1B4_650 0.48 +0.5
744,452 - Pf1N1B4_650 0.82 -1.0
744,541 + +0.5
744,541 + -0.1
744,541 + -1.6
744,541 + -0.6
744,541 + -0.6
744,541 + +0.7
744,542 - -1.0
744,542 - +2.0
744,542 - -0.4
744,542 - +2.6
744,542 - -0.0
744,542 - -2.4
744,542 - +1.6
744,554 - +1.6
744,554 - +1.6
744,598 - +0.6
744,612 + +0.2
744,612 + +2.3
744,612 + +0.6
744,613 - +1.8
744,613 - -0.0
744,613 - -0.0
744,613 - -0.0
744,613 - +0.7
744,613 - +1.0
744,613 - -2.0
744,613 - +0.6
744,613 - -1.6
744,615 - -0.0
744,615 - +0.7
744,615 - -0.0
744,615 - +0.4
744,696 + -0.8
744,696 + +0.5
744,697 - +0.2
744,697 - -1.0
744,697 - +0.4
744,697 - -0.6
744,697 - +0.6
744,697 - +0.8
744,697 - -0.0
744,791 + Pf1N1B4_651 0.12 +0.2
744,792 - Pf1N1B4_651 0.12 +1.4
744,792 - Pf1N1B4_651 0.12 +1.3
744,792 - +0.6
744,850 + Pf1N1B4_651 0.19 +0.7
744,850 + Pf1N1B4_651 0.19 +2.0
744,903 - Pf1N1B4_651 0.24 +3.6
744,903 - Pf1N1B4_651 0.24 -1.4
744,919 + Pf1N1B4_651 0.26 +0.6
744,919 + Pf1N1B4_651 0.26 -0.8
745,114 + Pf1N1B4_651 0.47 +0.4
745,115 - Pf1N1B4_651 0.47 +0.5
745,182 + Pf1N1B4_651 0.55 -0.6
745,438 + Pf1N1B4_651 0.83 -1.0
745,438 + Pf1N1B4_651 0.83 +0.7
745,438 + Pf1N1B4_651 0.83 +1.6
745,438 + Pf1N1B4_651 0.83 +0.1
745,439 - Pf1N1B4_651 0.83 +0.5
745,439 - Pf1N1B4_651 0.83 +1.4
745,477 + Pf1N1B4_651 0.87 +1.2
745,478 - Pf1N1B4_651 0.87 +1.0
745,478 - Pf1N1B4_651 0.87 -0.0
745,478 - Pf1N1B4_651 0.87 +1.4
745,478 - Pf1N1B4_651 0.87 -0.2
745,490 - Pf1N1B4_651 0.88 +0.9
745,629 - -1.4
745,747 - -1.0
745,759 + -1.3
745,762 + -1.6
745,762 + +0.3
745,762 + -2.4
745,762 + -0.0
745,762 + -1.6
745,762 + -2.4
745,762 + -2.4
745,763 - -0.6
745,763 - -2.0
745,894 + Pf1N1B4_652 0.12 -1.0
745,894 + -2.0
745,894 + Pf1N1B4_652 0.12 -1.8
745,894 + Pf1N1B4_652 0.12 -0.0
745,894 + Pf1N1B4_652 0.12 -2.0
745,894 + Pf1N1B4_652 0.12 +1.0
745,894 + Pf1N1B4_652 0.12 -0.0
745,895 - Pf1N1B4_652 0.12 -0.4
745,895 - Pf1N1B4_652 0.12 -1.0
745,895 - Pf1N1B4_652 0.12 +0.2
745,895 - Pf1N1B4_652 0.12 -1.0
745,895 - Pf1N1B4_652 0.12 +2.3
745,895 - Pf1N1B4_652 0.12 -1.6
745,896 + Pf1N1B4_652 0.12 -0.0
745,896 + Pf1N1B4_652 0.12 -1.0
745,896 + Pf1N1B4_652 0.12 -1.6
745,896 + Pf1N1B4_652 0.12 -0.0
745,896 + Pf1N1B4_652 0.12 -1.0
745,896 + -1.0
745,896 + Pf1N1B4_652 0.12 -0.6
745,896 + Pf1N1B4_652 0.12 -1.6
745,897 - Pf1N1B4_652 0.13 -2.0
745,897 - Pf1N1B4_652 0.13 -0.8
745,897 - Pf1N1B4_652 0.13 -2.4
745,897 - Pf1N1B4_652 0.13 -1.0
745,897 - -0.0
745,897 - Pf1N1B4_652 0.13 -2.8
745,897 - Pf1N1B4_652 0.13 -1.6
745,897 - Pf1N1B4_652 0.13 -1.5
745,897 - Pf1N1B4_652 0.13 -2.0
745,897 - -1.0
745,897 - Pf1N1B4_652 0.13 -3.2
745,897 - Pf1N1B4_652 0.13 -0.4
745,897 - Pf1N1B4_652 0.13 +0.2
745,921 + Pf1N1B4_652 0.14 -2.6
745,921 + Pf1N1B4_652 0.14 -2.6
745,921 + Pf1N1B4_652 0.14 -0.0
745,921 + Pf1N1B4_652 0.14 -0.0
745,922 - -1.0
745,922 - Pf1N1B4_652 0.14 -2.0
745,922 - Pf1N1B4_652 0.14 -1.0
745,976 + Pf1N1B4_652 0.16 -1.8
746,113 + Pf1N1B4_652 0.23 -2.0
746,114 - Pf1N1B4_652 0.23 -4.2
746,114 - Pf1N1B4_652 0.23 -1.6
746,114 - Pf1N1B4_652 0.23 -1.0
746,114 - Pf1N1B4_652 0.23 -1.0
746,166 - Pf1N1B4_652 0.26 -3.0
746,260 + Pf1N1B4_652 0.30 -0.0
746,260 + Pf1N1B4_652 0.30 -2.0
746,261 - Pf1N1B4_652 0.30 -3.0
746,261 - Pf1N1B4_652 0.30 -1.0
746,261 - Pf1N1B4_652 0.30 -2.6
746,504 - Pf1N1B4_652 0.42 -1.6
746,504 - Pf1N1B4_652 0.42 -1.6
746,563 + Pf1N1B4_652 0.45 -0.0
746,563 + Pf1N1B4_652 0.45 -0.8
746,563 + Pf1N1B4_652 0.45 -1.3
746,563 + Pf1N1B4_652 0.45 -1.6
746,563 + Pf1N1B4_652 0.45 +1.0
746,564 - Pf1N1B4_652 0.45 -2.4
746,564 - Pf1N1B4_652 0.45 -3.0
746,564 - Pf1N1B4_652 0.45 -1.0
746,564 - Pf1N1B4_652 0.45 -2.4
746,567 + Pf1N1B4_652 0.45 -0.0

Or see this region's nucleotide sequence