Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5820

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5819 and Pf1N1B4_5820 are separated by 614 nucleotidesPf1N1B4_5820 and Pf1N1B4_5821 overlap by 6 nucleotides Pf1N1B4_5819 - FIG00954356: hypothetical protein, at 252,144 to 253,589 _5819 Pf1N1B4_5820 - Transcriptional regulator, Cro/CI family, at 254,204 to 254,767 _5820 Pf1N1B4_5821 - Permease of the drug/metabolite transporter (DMT) superfamily, at 254,762 to 255,790 _5821 Position (kb) 254 255Strain fitness (log2 ratio) -2 -1 0 1 2at 253.213 kb on + strand, within Pf1N1B4_5819at 253.213 kb on + strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.214 kb on - strand, within Pf1N1B4_5819at 253.376 kb on + strand, within Pf1N1B4_5819at 253.376 kb on + strand, within Pf1N1B4_5819at 253.376 kb on + strand, within Pf1N1B4_5819at 253.397 kb on + strand, within Pf1N1B4_5819at 253.397 kb on + strand, within Pf1N1B4_5819at 253.397 kb on + strand, within Pf1N1B4_5819at 253.398 kb on - strandat 253.398 kb on - strand, within Pf1N1B4_5819at 253.399 kb on + strand, within Pf1N1B4_5819at 253.399 kb on + strand, within Pf1N1B4_5819at 253.399 kb on + strand, within Pf1N1B4_5819at 253.400 kb on - strand, within Pf1N1B4_5819at 253.400 kb on - strand, within Pf1N1B4_5819at 253.400 kb on - strand, within Pf1N1B4_5819at 253.400 kb on - strand, within Pf1N1B4_5819at 253.595 kb on - strandat 253.603 kb on - strandat 253.662 kb on - strandat 253.772 kb on - strandat 253.887 kb on - strandat 253.891 kb on + strandat 253.892 kb on - strandat 253.892 kb on - strandat 253.892 kb on - strandat 253.892 kb on - strandat 253.913 kb on - strandat 253.913 kb on - strandat 253.913 kb on - strandat 253.913 kb on - strandat 253.914 kb on + strandat 253.914 kb on + strandat 253.915 kb on - strandat 253.915 kb on - strandat 253.915 kb on - strandat 254.014 kb on - strandat 254.069 kb on - strandat 254.069 kb on - strandat 254.069 kb on - strandat 254.069 kb on - strandat 254.069 kb on - strandat 254.069 kb on - strandat 254.151 kb on - strandat 254.169 kb on + strandat 254.169 kb on + strandat 254.170 kb on - strandat 254.170 kb on - strandat 254.170 kb on - strandat 254.172 kb on - strandat 254.172 kb on - strandat 254.172 kb on - strandat 254.172 kb on - strandat 254.172 kb on - strandat 254.173 kb on + strandat 254.173 kb on + strandat 254.173 kb on + strandat 254.174 kb on - strandat 254.174 kb on - strandat 254.174 kb on - strandat 254.174 kb on - strandat 254.174 kb on - strandat 254.273 kb on - strand, within Pf1N1B4_5820at 254.285 kb on - strand, within Pf1N1B4_5820at 254.355 kb on + strand, within Pf1N1B4_5820at 254.356 kb on - strand, within Pf1N1B4_5820at 254.356 kb on - strand, within Pf1N1B4_5820at 254.356 kb on - strand, within Pf1N1B4_5820at 254.369 kb on - strand, within Pf1N1B4_5820at 254.371 kb on - strand, within Pf1N1B4_5820at 254.564 kb on + strand, within Pf1N1B4_5820at 254.770 kb on + strandat 254.799 kb on + strandat 254.932 kb on + strand, within Pf1N1B4_5821at 254.932 kb on + strand, within Pf1N1B4_5821at 254.933 kb on - strand, within Pf1N1B4_5821at 255.057 kb on + strand, within Pf1N1B4_5821at 255.188 kb on + strand, within Pf1N1B4_5821at 255.188 kb on + strand, within Pf1N1B4_5821at 255.188 kb on + strand, within Pf1N1B4_5821at 255.188 kb on + strand, within Pf1N1B4_5821at 255.392 kb on + strandat 255.392 kb on + strand, within Pf1N1B4_5821at 255.392 kb on + strand, within Pf1N1B4_5821at 255.392 kb on + strand, within Pf1N1B4_5821at 255.393 kb on - strand, within Pf1N1B4_5821at 255.411 kb on + strand, within Pf1N1B4_5821at 255.411 kb on + strand, within Pf1N1B4_5821at 255.412 kb on - strand, within Pf1N1B4_5821at 255.611 kb on + strand, within Pf1N1B4_5821at 255.611 kb on + strand, within Pf1N1B4_5821

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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253,213 + Pf1N1B4_5819 0.74 +0.9
253,213 + Pf1N1B4_5819 0.74 +0.1
253,214 - Pf1N1B4_5819 0.74 -1.3
253,214 - Pf1N1B4_5819 0.74 +0.4
253,214 - Pf1N1B4_5819 0.74 +0.7
253,214 - Pf1N1B4_5819 0.74 -1.3
253,214 - Pf1N1B4_5819 0.74 +0.1
253,214 - Pf1N1B4_5819 0.74 -0.0
253,214 - Pf1N1B4_5819 0.74 -1.7
253,376 + Pf1N1B4_5819 0.85 +2.0
253,376 + Pf1N1B4_5819 0.85 -0.8
253,376 + Pf1N1B4_5819 0.85 +0.7
253,397 + Pf1N1B4_5819 0.87 -0.9
253,397 + Pf1N1B4_5819 0.87 -0.3
253,397 + Pf1N1B4_5819 0.87 +0.7
253,398 - -0.3
253,398 - Pf1N1B4_5819 0.87 +1.5
253,399 + Pf1N1B4_5819 0.87 -0.5
253,399 + Pf1N1B4_5819 0.87 +0.6
253,399 + Pf1N1B4_5819 0.87 +0.3
253,400 - Pf1N1B4_5819 0.87 +1.7
253,400 - Pf1N1B4_5819 0.87 -1.6
253,400 - Pf1N1B4_5819 0.87 -0.3
253,400 - Pf1N1B4_5819 0.87 -0.3
253,595 - +0.7
253,603 - +0.0
253,662 - +1.3
253,772 - +0.5
253,887 - -0.3
253,891 + -1.3
253,892 - +0.3
253,892 - +0.1
253,892 - +2.3
253,892 - +0.1
253,913 - -0.3
253,913 - -2.3
253,913 - -1.3
253,913 - +0.3
253,914 + +0.7
253,914 + +0.4
253,915 - +0.9
253,915 - +0.3
253,915 - +0.5
254,014 - -0.7
254,069 - +0.7
254,069 - +0.7
254,069 - -1.1
254,069 - -0.3
254,069 - +0.5
254,069 - -0.0
254,151 - +1.7
254,169 + -0.0
254,169 + -1.9
254,170 - +0.7
254,170 - +0.2
254,170 - +0.3
254,172 - +1.3
254,172 - +0.1
254,172 - +2.0
254,172 - -1.3
254,172 - -0.3
254,173 + -0.5
254,173 + -2.3
254,173 + +0.5
254,174 - +1.1
254,174 - +0.5
254,174 - -1.3
254,174 - +1.3
254,174 - +1.3
254,273 - Pf1N1B4_5820 0.12 +0.7
254,285 - Pf1N1B4_5820 0.14 +0.7
254,355 + Pf1N1B4_5820 0.27 -1.3
254,356 - Pf1N1B4_5820 0.27 +0.5
254,356 - Pf1N1B4_5820 0.27 -0.3
254,356 - Pf1N1B4_5820 0.27 +1.6
254,369 - Pf1N1B4_5820 0.29 +1.3
254,371 - Pf1N1B4_5820 0.30 -0.3
254,564 + Pf1N1B4_5820 0.64 +0.7
254,770 + -0.9
254,799 + -0.3
254,932 + Pf1N1B4_5821 0.17 -1.9
254,932 + Pf1N1B4_5821 0.17 -0.7
254,933 - Pf1N1B4_5821 0.17 -2.6
255,057 + Pf1N1B4_5821 0.29 +0.7
255,188 + Pf1N1B4_5821 0.41 +1.3
255,188 + Pf1N1B4_5821 0.41 -0.6
255,188 + Pf1N1B4_5821 0.41 +0.0
255,188 + Pf1N1B4_5821 0.41 -1.9
255,392 + -1.9
255,392 + Pf1N1B4_5821 0.61 +1.7
255,392 + Pf1N1B4_5821 0.61 +2.7
255,392 + Pf1N1B4_5821 0.61 +0.7
255,393 - Pf1N1B4_5821 0.61 -0.0
255,411 + Pf1N1B4_5821 0.63 +0.5
255,411 + Pf1N1B4_5821 0.63 -1.6
255,412 - Pf1N1B4_5821 0.63 +0.4
255,611 + Pf1N1B4_5821 0.83 -1.4
255,611 + Pf1N1B4_5821 0.83 -0.3

Or see this region's nucleotide sequence