Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4563 and Pf1N1B4_4564 are separated by 52 nucleotides Pf1N1B4_4564 and Pf1N1B4_4565 are separated by 407 nucleotides Pf1N1B4_4565 and Pf1N1B4_4566 are separated by 119 nucleotides
Pf1N1B4_4563 - Sulfate transporter, at 5,034,249 to 5,035,925
_4563
Pf1N1B4_4564 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 5,035,978 to 5,038,578
_4564
Pf1N1B4_4565 - FIG00955280: hypothetical protein, at 5,038,986 to 5,039,456
_4565
Pf1N1B4_4566 - Universal stress protein family 7, at 5,039,576 to 5,040,439
_4566
Position (kb)
5035
5036
5037
5038
5039 Strain fitness (log2 ratio)
-2
-1
0
1 at 5034.988 kb on + strand, within Pf1N1B4_4563 at 5035.029 kb on + strand, within Pf1N1B4_4563 at 5035.269 kb on + strand, within Pf1N1B4_4563 at 5035.269 kb on + strand, within Pf1N1B4_4563 at 5035.356 kb on + strand, within Pf1N1B4_4563 at 5035.530 kb on + strand, within Pf1N1B4_4563 at 5035.530 kb on + strand, within Pf1N1B4_4563 at 5035.923 kb on + strand at 5039.415 kb on + strand at 5039.415 kb on + strand at 5039.415 kb on + strand at 5039.415 kb on + strand at 5039.454 kb on + strand at 5039.558 kb on + strand at 5039.558 kb on + strand at 5039.559 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 5,034,988 + Pf1N1B4_4563 0.44 -2.0 5,035,029 + Pf1N1B4_4563 0.47 +1.2 5,035,269 + Pf1N1B4_4563 0.61 +0.4 5,035,269 + Pf1N1B4_4563 0.61 +0.2 5,035,356 + Pf1N1B4_4563 0.66 -0.8 5,035,530 + Pf1N1B4_4563 0.76 -0.4 5,035,530 + Pf1N1B4_4563 0.76 +0.8 5,035,923 + +1.6 5,039,415 + -0.8 5,039,415 + +1.6 5,039,415 + -0.8 5,039,415 + -2.7 5,039,454 + -1.0 5,039,558 + -1.0 5,039,558 + -0.4 5,039,559 - +0.2
Or see this region's nucleotide sequence