Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4564

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4563 and Pf1N1B4_4564 are separated by 52 nucleotidesPf1N1B4_4564 and Pf1N1B4_4565 are separated by 407 nucleotidesPf1N1B4_4565 and Pf1N1B4_4566 are separated by 119 nucleotides Pf1N1B4_4563 - Sulfate transporter, at 5,034,249 to 5,035,925 _4563 Pf1N1B4_4564 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 5,035,978 to 5,038,578 _4564 Pf1N1B4_4565 - FIG00955280: hypothetical protein, at 5,038,986 to 5,039,456 _4565 Pf1N1B4_4566 - Universal stress protein family 7, at 5,039,576 to 5,040,439 _4566 Position (kb) 5035 5036 5037 5038 5039Strain fitness (log2 ratio) -2 -1 0 1at 5034.988 kb on + strand, within Pf1N1B4_4563at 5035.029 kb on + strand, within Pf1N1B4_4563at 5035.269 kb on + strand, within Pf1N1B4_4563at 5035.269 kb on + strand, within Pf1N1B4_4563at 5035.356 kb on + strand, within Pf1N1B4_4563at 5035.530 kb on + strand, within Pf1N1B4_4563at 5035.530 kb on + strand, within Pf1N1B4_4563at 5035.923 kb on + strandat 5039.415 kb on + strandat 5039.415 kb on + strandat 5039.415 kb on + strandat 5039.415 kb on + strandat 5039.454 kb on + strandat 5039.558 kb on + strandat 5039.558 kb on + strandat 5039.559 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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5,034,988 + Pf1N1B4_4563 0.44 -2.0
5,035,029 + Pf1N1B4_4563 0.47 +1.2
5,035,269 + Pf1N1B4_4563 0.61 +0.4
5,035,269 + Pf1N1B4_4563 0.61 +0.2
5,035,356 + Pf1N1B4_4563 0.66 -0.8
5,035,530 + Pf1N1B4_4563 0.76 -0.4
5,035,530 + Pf1N1B4_4563 0.76 +0.8
5,035,923 + +1.6
5,039,415 + -0.8
5,039,415 + +1.6
5,039,415 + -0.8
5,039,415 + -2.7
5,039,454 + -1.0
5,039,558 + -1.0
5,039,558 + -0.4
5,039,559 - +0.2

Or see this region's nucleotide sequence