Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4281 and Pf1N1B4_4282 are separated by 134 nucleotides Pf1N1B4_4282 and Pf1N1B4_4283 are separated by 4 nucleotides Pf1N1B4_4283 and Pf1N1B4_4284 are separated by 33 nucleotides Pf1N1B4_4284 and Pf1N1B4_4285 are separated by 78 nucleotides
Pf1N1B4_4281 - Glyceraldehyde-3-phosphate ketol-isomerase (EC 5.3.1.1), at 4,747,897 to 4,748,757
_4281
Pf1N1B4_4282 - Myo-inositol 2-dehydrogenase (EC 1.1.1.18), at 4,748,892 to 4,749,944
_4282
Pf1N1B4_4283 - hypothetical protein, at 4,749,949 to 4,750,065
_4283
Pf1N1B4_4284 - hypothetical protein, at 4,750,099 to 4,750,233
_4284
Pf1N1B4_4285 - Inositol transport system sugar-binding protein, at 4,750,312 to 4,751,238
_4285
Position (kb) 4748
4749
4750 Strain fitness (log2 ratio) -2
-1
0
1 at 4747.919 kb on - strand at 4747.924 kb on + strand at 4747.925 kb on - strand at 4748.020 kb on + strand, within Pf1N1B4_4281 at 4748.020 kb on + strand, within Pf1N1B4_4281 at 4748.021 kb on - strand, within Pf1N1B4_4281 at 4748.021 kb on - strand, within Pf1N1B4_4281 at 4748.021 kb on - strand, within Pf1N1B4_4281 at 4748.102 kb on + strand, within Pf1N1B4_4281 at 4748.103 kb on - strand, within Pf1N1B4_4281 at 4748.113 kb on + strand, within Pf1N1B4_4281 at 4748.114 kb on - strand, within Pf1N1B4_4281 at 4748.114 kb on - strand, within Pf1N1B4_4281 at 4748.114 kb on - strand, within Pf1N1B4_4281 at 4748.339 kb on - strand, within Pf1N1B4_4281 at 4748.408 kb on - strand, within Pf1N1B4_4281 at 4748.437 kb on + strand, within Pf1N1B4_4281 at 4748.477 kb on - strand, within Pf1N1B4_4281 at 4748.477 kb on - strand, within Pf1N1B4_4281 at 4748.518 kb on + strand, within Pf1N1B4_4281 at 4748.518 kb on + strand, within Pf1N1B4_4281 at 4748.518 kb on + strand, within Pf1N1B4_4281 at 4748.519 kb on - strand, within Pf1N1B4_4281 at 4748.875 kb on + strand at 4748.875 kb on + strand at 4748.875 kb on + strand at 4748.875 kb on + strand at 4748.875 kb on + strand at 4749.457 kb on - strand, within Pf1N1B4_4282 at 4749.471 kb on + strand, within Pf1N1B4_4282 at 4749.509 kb on + strand, within Pf1N1B4_4282 at 4749.510 kb on - strand at 4749.510 kb on - strand, within Pf1N1B4_4282 at 4749.510 kb on - strand, within Pf1N1B4_4282 at 4749.613 kb on - strand, within Pf1N1B4_4282 at 4749.781 kb on - strand, within Pf1N1B4_4282 at 4749.781 kb on - strand, within Pf1N1B4_4282 at 4749.790 kb on + strand, within Pf1N1B4_4282 at 4750.121 kb on - strand, within Pf1N1B4_4284 at 4750.221 kb on - strand at 4750.279 kb on + strand at 4750.383 kb on + strand at 4750.432 kb on + strand, within Pf1N1B4_4285 at 4750.535 kb on + strand, within Pf1N1B4_4285 at 4750.645 kb on + strand at 4750.645 kb on + strand, within Pf1N1B4_4285 at 4750.645 kb on + strand, within Pf1N1B4_4285 at 4750.739 kb on - strand, within Pf1N1B4_4285 at 4750.849 kb on + strand, within Pf1N1B4_4285
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 4,747,919 - -1.6 4,747,924 + +0.7 4,747,925 - -1.4 4,748,020 + Pf1N1B4_4281 0.14 +0.6 4,748,020 + Pf1N1B4_4281 0.14 -1.4 4,748,021 - Pf1N1B4_4281 0.14 -0.8 4,748,021 - Pf1N1B4_4281 0.14 +0.6 4,748,021 - Pf1N1B4_4281 0.14 +1.2 4,748,102 + Pf1N1B4_4281 0.24 -0.4 4,748,103 - Pf1N1B4_4281 0.24 +1.5 4,748,113 + Pf1N1B4_4281 0.25 -1.4 4,748,114 - Pf1N1B4_4281 0.25 -0.2 4,748,114 - Pf1N1B4_4281 0.25 +0.5 4,748,114 - Pf1N1B4_4281 0.25 +0.5 4,748,339 - Pf1N1B4_4281 0.51 +1.5 4,748,408 - Pf1N1B4_4281 0.59 -0.7 4,748,437 + Pf1N1B4_4281 0.63 +1.6 4,748,477 - Pf1N1B4_4281 0.67 +0.6 4,748,477 - Pf1N1B4_4281 0.67 +1.5 4,748,518 + Pf1N1B4_4281 0.72 -0.1 4,748,518 + Pf1N1B4_4281 0.72 -2.5 4,748,518 + Pf1N1B4_4281 0.72 +0.2 4,748,519 - Pf1N1B4_4281 0.72 +1.2 4,748,875 + +0.3 4,748,875 + -0.8 4,748,875 + +0.4 4,748,875 + +0.2 4,748,875 + +0.6 4,749,457 - Pf1N1B4_4282 0.54 +0.2 4,749,471 + Pf1N1B4_4282 0.55 +0.2 4,749,509 + Pf1N1B4_4282 0.59 +0.4 4,749,510 - +1.2 4,749,510 - Pf1N1B4_4282 0.59 +0.4 4,749,510 - Pf1N1B4_4282 0.59 -0.7 4,749,613 - Pf1N1B4_4282 0.68 +0.2 4,749,781 - Pf1N1B4_4282 0.84 +0.6 4,749,781 - Pf1N1B4_4282 0.84 +1.6 4,749,790 + Pf1N1B4_4282 0.85 +1.6 4,750,121 - Pf1N1B4_4284 0.16 +1.6 4,750,221 - +0.2 4,750,279 + +0.5 4,750,383 + +0.6 4,750,432 + Pf1N1B4_4285 0.13 +0.4 4,750,535 + Pf1N1B4_4285 0.24 -0.0 4,750,645 + -0.4 4,750,645 + Pf1N1B4_4285 0.36 +0.1 4,750,645 + Pf1N1B4_4285 0.36 -1.9 4,750,739 - Pf1N1B4_4285 0.46 -1.4 4,750,849 + Pf1N1B4_4285 0.58 +0.1
Or see this region's nucleotide sequence