Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3679 and Pf1N1B4_3680 are separated by 11 nucleotides Pf1N1B4_3680 and Pf1N1B4_3681 are separated by 276 nucleotides Pf1N1B4_3681 and Pf1N1B4_3682 are separated by 42 nucleotides
Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230
_3679
Pf1N1B4_3680 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 4,087,242 to 4,087,946
_3680
Pf1N1B4_3681 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 4,088,223 to 4,091,054
_3681
Pf1N1B4_3682 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 4,091,097 to 4,092,314
_3682
Position (kb)
4088
4089
4090
4091
4092 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 4087.972 kb on + strand at 4087.981 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4087.995 kb on + strand at 4088.034 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.051 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.053 kb on + strand at 4088.068 kb on + strand at 4088.068 kb on + strand at 4091.045 kb on + strand at 4091.045 kb on + strand at 4091.045 kb on + strand at 4091.045 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 4,087,972 + +0.1 4,087,981 + -0.2 4,087,995 + -1.2 4,087,995 + +1.1 4,087,995 + +0.2 4,087,995 + +1.2 4,087,995 + +1.1 4,088,034 + -0.2 4,088,051 + +1.3 4,088,051 + +4.1 4,088,051 + +2.3 4,088,051 + +3.7 4,088,051 + +1.6 4,088,051 + +1.9 4,088,053 + +2.4 4,088,053 + +2.1 4,088,053 + +3.6 4,088,053 + +1.8 4,088,053 + +1.6 4,088,053 + +2.4 4,088,053 + +0.7 4,088,068 + +1.7 4,088,068 + +0.5 4,091,045 + +1.1 4,091,045 + +0.8 4,091,045 + +0.8 4,091,045 + +1.6
Or see this region's nucleotide sequence