Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3680

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3679 and Pf1N1B4_3680 are separated by 11 nucleotidesPf1N1B4_3680 and Pf1N1B4_3681 are separated by 276 nucleotides Pf1N1B4_3679 - Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1), at 4,085,458 to 4,087,230 _3679 Pf1N1B4_3680 - Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1), at 4,087,242 to 4,087,946 _3680 Pf1N1B4_3681 - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2), at 4,088,223 to 4,091,054 _3681 Position (kb) 4087 4088Strain fitness (log2 ratio) -1 0 1 2 3 4at 4087.972 kb on + strandat 4087.981 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4087.995 kb on + strandat 4088.034 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.051 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.053 kb on + strandat 4088.068 kb on + strandat 4088.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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4,087,972 + +0.1
4,087,981 + -0.2
4,087,995 + -1.2
4,087,995 + +1.1
4,087,995 + +0.2
4,087,995 + +1.2
4,087,995 + +1.1
4,088,034 + -0.2
4,088,051 + +1.3
4,088,051 + +4.1
4,088,051 + +2.3
4,088,051 + +3.7
4,088,051 + +1.6
4,088,051 + +1.9
4,088,053 + +2.4
4,088,053 + +2.1
4,088,053 + +3.6
4,088,053 + +1.8
4,088,053 + +1.6
4,088,053 + +2.4
4,088,053 + +0.7
4,088,068 + +1.7
4,088,068 + +0.5

Or see this region's nucleotide sequence