Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2024

Experiment: L-Valine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Valine (C)
2,308,931	+		Pf1N1B4_2023	0.28	+0.3
2,308,931	+		Pf1N1B4_2023	0.28	+0.3
2,309,037	+		Pf1N1B4_2023	0.39	-1.7
2,309,038	-		Pf1N1B4_2023	0.39	+1.0
2,309,048	+		Pf1N1B4_2023	0.40	+1.0
2,309,048	+		Pf1N1B4_2023	0.40	+1.9
2,309,048	+		Pf1N1B4_2023	0.40	+1.3
2,309,049	-		Pf1N1B4_2023	0.40	-0.4
2,309,049	-		Pf1N1B4_2023	0.40	+0.3
2,309,049	-		Pf1N1B4_2023	0.40	+0.9
2,309,049	-		Pf1N1B4_2023	0.40	+0.3
2,309,177	+		Pf1N1B4_2023	0.53	-0.3
2,309,177	+		Pf1N1B4_2023	0.53	+0.8
2,309,177	+		Pf1N1B4_2023	0.53	+1.4
2,309,178	-		Pf1N1B4_2023	0.53	+0.5
2,309,178	-		Pf1N1B4_2023	0.53	+1.3
2,309,178	-		Pf1N1B4_2023	0.53	+1.1
2,309,178	-		Pf1N1B4_2023	0.53	+0.3
2,309,178	-		Pf1N1B4_2023	0.53	-0.0
2,309,178	-		Pf1N1B4_2023	0.53	+0.3
2,309,339	+		Pf1N1B4_2023	0.69	+1.9
2,309,340	-		Pf1N1B4_2023	0.69	+0.1
2,309,522	+		Pf1N1B4_2023	0.87	+1.6
2,309,522	+		Pf1N1B4_2023	0.87	+1.3
2,309,522	+		Pf1N1B4_2023	0.87	+0.7
2,309,523	-		Pf1N1B4_2023	0.87	+0.4
2,309,523	-		Pf1N1B4_2023	0.87	+0.3
2,309,604	-				-0.1
2,309,604	-				+0.9
2,309,604	-				+1.0
2,309,604	-				+1.0
2,309,604	-				+1.3
2,309,604	-				+0.1
2,309,753	+				+3.8
2,309,754	-				-0.4
2,310,126	-		Pf1N1B4_2024	0.21	+0.8
2,310,198	+		Pf1N1B4_2024	0.26	+1.6
2,310,198	+		Pf1N1B4_2024	0.26	+1.3
2,310,198	+		Pf1N1B4_2024	0.26	+0.3
2,310,199	-				-0.7
2,310,199	-		Pf1N1B4_2024	0.26	-0.3
2,310,199	-		Pf1N1B4_2024	0.26	+2.5
2,310,201	+		Pf1N1B4_2024	0.26	+0.7
2,310,201	+		Pf1N1B4_2024	0.26	+0.9
2,310,201	+		Pf1N1B4_2024	0.26	+0.0
2,310,201	+		Pf1N1B4_2024	0.26	+1.3
2,310,201	+		Pf1N1B4_2024	0.26	+1.9
2,310,201	+		Pf1N1B4_2024	0.26	-0.4
2,310,202	-		Pf1N1B4_2024	0.26	+0.3
2,310,202	-		Pf1N1B4_2024	0.26	+1.5
2,310,202	-		Pf1N1B4_2024	0.26	+1.6
2,310,202	-		Pf1N1B4_2024	0.26	+0.6
2,310,202	-		Pf1N1B4_2024	0.26	+0.6
2,310,202	-		Pf1N1B4_2024	0.26	+1.5
2,310,202	-		Pf1N1B4_2024	0.26	+2.2
2,310,202	-		Pf1N1B4_2024	0.26	+1.3
2,310,202	-		Pf1N1B4_2024	0.26	-0.7
2,310,207	+		Pf1N1B4_2024	0.26	+2.3
2,310,207	+		Pf1N1B4_2024	0.26	+1.3
2,310,208	-		Pf1N1B4_2024	0.26	+0.6
2,310,333	+		Pf1N1B4_2024	0.35	+1.5
2,310,333	+		Pf1N1B4_2024	0.35	+1.2
2,310,624	+		Pf1N1B4_2024	0.55	+1.8
2,310,624	+		Pf1N1B4_2024	0.55	+1.6
2,310,624	+		Pf1N1B4_2024	0.55	+1.3
2,310,624	+		Pf1N1B4_2024	0.55	-0.7
2,310,624	+		Pf1N1B4_2024	0.55	+1.7
2,310,625	-		Pf1N1B4_2024	0.55	+1.9
2,310,625	-		Pf1N1B4_2024	0.55	+3.1
2,310,625	-		Pf1N1B4_2024	0.55	-0.5
2,310,625	-		Pf1N1B4_2024	0.55	+2.1
2,310,625	-		Pf1N1B4_2024	0.55	+2.0
2,310,625	-		Pf1N1B4_2024	0.55	+1.8
2,310,625	-		Pf1N1B4_2024	0.55	-0.4
2,310,642	+		Pf1N1B4_2024	0.56	+1.5
2,310,642	+		Pf1N1B4_2024	0.56	+0.6
2,310,642	+		Pf1N1B4_2024	0.56	+2.9
2,310,642	+		Pf1N1B4_2024	0.56	+1.3
2,310,642	+		Pf1N1B4_2024	0.56	+1.1
2,310,642	+		Pf1N1B4_2024	0.56	+2.1
2,310,643	-		Pf1N1B4_2024	0.56	-0.9
2,310,643	-		Pf1N1B4_2024	0.56	+1.6
2,310,643	-		Pf1N1B4_2024	0.56	+0.8
2,310,643	-		Pf1N1B4_2024	0.56	+0.8
2,310,662	+		Pf1N1B4_2024	0.58	+1.3
2,310,747	+		Pf1N1B4_2024	0.63	+0.8
2,310,747	+		Pf1N1B4_2024	0.63	+0.3
2,310,747	+		Pf1N1B4_2024	0.63	+1.9
2,310,748	-		Pf1N1B4_2024	0.64	+4.3
2,310,891	+		Pf1N1B4_2024	0.73	-0.1
2,310,892	-		Pf1N1B4_2024	0.73	+2.8
2,311,206	+				+1.6
2,311,206	+				+0.6
2,311,206	+				+1.9
2,311,207	-				+2.2
2,311,239	-				+0.3
2,311,281	+				+1.5
2,311,335	-				-2.7
2,311,402	+				+1.1
2,311,402	+				+1.4
2,311,402	+				+2.3
2,311,403	-				-3.4
2,311,403	-				-3.0
2,311,403	-				-2.3
2,311,403	-				-2.0
2,311,406	-				-1.3
2,311,406	-				-1.7
2,311,406	-				-3.5
2,311,406	-				-2.0
2,311,406	-				-3.3
2,311,406	-				-1.9
2,311,406	-				-3.7
2,311,406	-				+0.3
2,311,406	-				-3.8
2,311,406	-				-3.1
2,311,471	-				-2.0
2,311,471	-				-3.3
2,311,471	-				-2.3
2,311,472	+				-1.7
2,311,472	+				+0.3
2,311,472	+				+1.5
2,311,472	+				-0.2
2,311,472	+				+0.7
2,311,472	+				+1.6
2,311,472	+				+2.4
2,311,472	+				+2.6
2,311,472	+				+1.0
2,311,472	+				+0.7
2,311,472	+				+1.9
2,311,472	+				+1.7
2,311,472	+				+1.9
2,311,472	+				+3.6
2,311,472	+				+2.0
2,311,472	+				+2.0
2,311,472	+				+1.6
2,311,472	+				+0.9
2,311,472	+				+1.0
2,311,473	-				-2.0
2,311,473	-				-3.0
2,311,473	-				-3.9
2,311,473	-				-2.0
2,311,473	-				-3.9
2,311,473	-				-3.8
2,311,473	-				+0.3
2,311,473	-				-0.7
2,311,473	-				-2.7
2,311,473	-				-2.3
2,311,473	-				-2.7
2,311,473	-				-0.7
2,311,473	-				-3.1
2,311,473	-				-3.5
2,311,473	-				-2.5
2,311,473	-				-3.6
2,311,473	-				-0.7
2,311,473	-				-2.6
2,311,473	-				-0.3
2,311,473	-				-2.3
2,311,473	-				-3.9
2,311,473	-				-1.9
2,311,473	-				-2.0
2,311,473	-				-2.5
2,311,473	-				-0.7
2,311,473	-				-1.3
2,311,473	-				-1.4
2,311,473	-				-7.0
2,311,473	-				-3.9
2,311,473	-				-3.7
2,311,473	-				-3.9
2,311,473	-				-1.7
2,311,473	-				-2.0
2,311,473	-				-3.9
2,311,473	-				-4.0
2,311,473	-				-2.5
2,311,473	-				-2.1
2,311,473	-				-3.3
2,311,473	-				-3.2
2,311,473	-				-0.7
2,311,473	-				-4.7
2,311,473	-				-2.3
2,311,473	-				-2.0
2,311,476	+				+1.3
2,311,476	+				-0.3
2,311,476	+				+1.6
2,311,476	+				+3.5
2,311,476	+				+0.7
2,311,476	+				+0.7
2,311,476	+				+0.3
2,311,476	+				+1.5
2,311,476	+				+0.3
2,311,476	+				+2.6
2,311,477	-				-1.4
2,311,477	-				+0.0
2,311,477	-				-2.9
2,311,477	-				-2.7
2,311,477	-				-3.3
2,311,477	-				-0.7
2,311,477	-				-3.3
2,311,477	-				-3.9
2,311,477	-				-2.7
2,311,477	-				-4.1
2,311,477	-				-3.3
2,311,477	-				-6.5
2,311,477	-				-3.5
2,311,477	-				-4.0
2,311,477	-				-4.2
2,311,477	-				-3.1
2,311,477	-				-2.9
2,311,477	-				-3.9
2,311,477	-				-2.5
2,311,477	-				-3.0
2,311,477	-				-2.9
2,311,477	-				-2.7
2,311,477	-				-2.7
2,311,477	-				-2.0
2,311,560	+				-0.0
2,311,561	-				-3.7
2,311,561	-				-2.3
2,311,561	-				-1.7
2,311,561	-				-1.3
2,311,561	-				-4.3
2,311,561	-				-2.9
2,311,561	-				-2.4
2,311,561	-				-2.7
2,311,561	-				-0.7
2,311,561	-				-3.1
2,311,561	-				+0.3
2,311,561	-				-2.5
2,311,564	+				+2.5
2,311,564	+				-0.1
2,311,564	+				+1.3
2,311,564	+				-0.7
2,311,565	-				-4.1
2,311,565	-				-1.7
2,311,565	-				+0.3
2,311,565	-				-1.7
2,311,565	-				-2.0
2,311,565	-				-2.9
2,311,565	-				-2.9
2,311,565	-				-0.7
2,311,565	-				-1.3
2,311,734	-				-2.5
2,311,734	-				-2.7
2,311,734	-				-2.5
2,311,734	-				+0.3
2,311,767	+				+0.7
2,311,767	+				+0.2
2,311,768	-				+0.3
2,311,768	-				-0.7
2,311,982	-		Pf1N1B4_2025	0.12	+0.9