Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_156 and Pf1N1B4_157 are separated by 91 nucleotides Pf1N1B4_157 and Pf1N1B4_158 are separated by 37 nucleotides Pf1N1B4_158 and Pf1N1B4_159 are separated by 26 nucleotides
Pf1N1B4_156 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 198,975 to 199,967
_156
Pf1N1B4_157 - ThiJ/PfpI family protein, at 200,059 to 200,745
_157
Pf1N1B4_158 - FIG00456158: hypothetical protein, at 200,783 to 201,112
_158
Pf1N1B4_159 - Putative threonine efflux protein, at 201,139 to 201,768
_159
Position (kb) 200
201 Strain fitness (log2 ratio) -1
0
1
2 at 199.531 kb on - strand, within Pf1N1B4_156 at 199.968 kb on - strand at 199.968 kb on - strand at 200.012 kb on - strand at 200.019 kb on + strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.020 kb on - strand at 200.122 kb on + strand at 200.123 kb on - strand at 200.123 kb on - strand at 200.123 kb on - strand at 200.345 kb on - strand, within Pf1N1B4_157 at 200.345 kb on - strand, within Pf1N1B4_157 at 200.362 kb on - strand, within Pf1N1B4_157 at 200.599 kb on + strand, within Pf1N1B4_157 at 200.832 kb on + strand, within Pf1N1B4_158 at 200.833 kb on - strand, within Pf1N1B4_158 at 200.833 kb on - strand at 200.833 kb on - strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.935 kb on + strand, within Pf1N1B4_158 at 200.956 kb on - strand at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 200.959 kb on - strand, within Pf1N1B4_158 at 201.090 kb on + strand at 201.091 kb on - strand at 201.095 kb on - strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.108 kb on + strand at 201.109 kb on - strand at 201.109 kb on - strand at 201.231 kb on + strand at 201.255 kb on + strand, within Pf1N1B4_159 at 201.256 kb on - strand, within Pf1N1B4_159 at 201.392 kb on - strand, within Pf1N1B4_159 at 201.665 kb on + strand, within Pf1N1B4_159 at 201.666 kb on - strand, within Pf1N1B4_159
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 199,531 - Pf1N1B4_156 0.56 +0.4 199,968 - +0.8 199,968 - +0.6 200,012 - +0.6 200,019 + -0.8 200,020 - -0.2 200,020 - +0.0 200,020 - +0.4 200,122 + +0.6 200,123 - -0.4 200,123 - +1.4 200,123 - -0.0 200,345 - Pf1N1B4_157 0.42 +1.2 200,345 - Pf1N1B4_157 0.42 +1.2 200,362 - Pf1N1B4_157 0.44 +1.6 200,599 + Pf1N1B4_157 0.79 +0.1 200,832 + Pf1N1B4_158 0.15 +0.8 200,833 - Pf1N1B4_158 0.15 +0.1 200,833 - -0.2 200,833 - Pf1N1B4_158 0.15 +0.8 200,935 + Pf1N1B4_158 0.46 +2.4 200,935 + Pf1N1B4_158 0.46 -0.6 200,956 - +1.2 200,959 - Pf1N1B4_158 0.53 +1.2 200,959 - Pf1N1B4_158 0.53 -0.9 200,959 - Pf1N1B4_158 0.53 +0.5 201,090 + +0.6 201,091 - +0.6 201,095 - -0.8 201,108 + +0.6 201,108 + +0.3 201,108 + +1.4 201,108 + +1.2 201,108 + -0.9 201,109 - +0.8 201,109 - +1.8 201,231 + -0.2 201,255 + Pf1N1B4_159 0.18 +0.6 201,256 - Pf1N1B4_159 0.19 +0.6 201,392 - Pf1N1B4_159 0.40 +1.0 201,665 + Pf1N1B4_159 0.83 +0.2 201,666 - Pf1N1B4_159 0.84 +0.8
Or see this region's nucleotide sequence