Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06485

Experiment: 2'-Deoxyinosine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06484 and H281DRAFT_06485 are separated by 336 nucleotidesH281DRAFT_06485 and H281DRAFT_06486 are separated by 130 nucleotides H281DRAFT_06484: H281DRAFT_06484 - amino acid ABC transporter substrate-binding protein, PAAT family, at 22,404 to 23,204 _06484 H281DRAFT_06485: H281DRAFT_06485 - c-di-GMP-related signal transduction protein, contains EAL and HDOD domains, at 23,541 to 24,920 _06485 H281DRAFT_06486: H281DRAFT_06486 - Predicted signal transduction protein, at 25,051 to 26,508 _06486 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1 2 3 4at 22.860 kb on + strand, within H281DRAFT_06484at 22.860 kb on + strand, within H281DRAFT_06484at 23.176 kb on - strandat 23.176 kb on - strandat 23.345 kb on + strandat 23.379 kb on - strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.461 kb on + strandat 23.462 kb on - strandat 23.462 kb on - strandat 23.856 kb on + strand, within H281DRAFT_06485at 23.857 kb on - strand, within H281DRAFT_06485at 23.943 kb on - strand, within H281DRAFT_06485at 24.414 kb on - strand, within H281DRAFT_06485at 24.414 kb on - strand, within H281DRAFT_06485at 25.024 kb on - strandat 25.024 kb on - strandat 25.024 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
remove
22,860 + H281DRAFT_06484 0.57 -0.4
22,860 + H281DRAFT_06484 0.57 -0.7
23,176 - +0.7
23,176 - +1.0
23,345 + -0.7
23,379 - -0.7
23,461 + -0.4
23,461 + +0.8
23,461 + -0.0
23,461 + +0.1
23,461 + +0.3
23,462 - +1.7
23,462 - +0.2
23,856 + H281DRAFT_06485 0.23 +1.0
23,857 - H281DRAFT_06485 0.23 -0.2
23,943 - H281DRAFT_06485 0.29 -0.4
24,414 - H281DRAFT_06485 0.63 -0.2
24,414 - H281DRAFT_06485 0.63 -0.1
25,024 - -0.2
25,024 - +4.2
25,024 - -1.1

Or see this region's nucleotide sequence