Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05808

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05807 and H281DRAFT_05808 are separated by 13 nucleotidesH281DRAFT_05808 and H281DRAFT_05809 are separated by 288 nucleotides H281DRAFT_05807: H281DRAFT_05807 - hypothetical protein, at 83,061 to 84,233 _05807 H281DRAFT_05808: H281DRAFT_05808 - Tfp pilus assembly protein PilF, at 84,247 to 85,980 _05808 H281DRAFT_05809: H281DRAFT_05809 - Uncharacterized membrane protein, at 86,269 to 87,225 _05809 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.408 kb on + strand, within H281DRAFT_05807at 83.418 kb on + strand, within H281DRAFT_05807at 83.438 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.448 kb on + strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.449 kb on - strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.575 kb on + strand, within H281DRAFT_05807at 83.576 kb on - strand, within H281DRAFT_05807at 83.604 kb on + strand, within H281DRAFT_05807at 83.605 kb on - strand, within H281DRAFT_05807at 83.751 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strandat 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.812 kb on + strand, within H281DRAFT_05807at 83.813 kb on - strandat 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.813 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.815 kb on - strand, within H281DRAFT_05807at 83.924 kb on + strand, within H281DRAFT_05807at 83.924 kb on + strandat 83.925 kb on - strand, within H281DRAFT_05807at 84.248 kb on + strandat 84.768 kb on - strand, within H281DRAFT_05808at 84.768 kb on - strand, within H281DRAFT_05808at 84.845 kb on + strand, within H281DRAFT_05808at 84.846 kb on - strand, within H281DRAFT_05808at 84.876 kb on + strand, within H281DRAFT_05808at 84.877 kb on - strand, within H281DRAFT_05808at 84.880 kb on + strand, within H281DRAFT_05808at 84.880 kb on + strand, within H281DRAFT_05808at 84.934 kb on + strand, within H281DRAFT_05808at 85.093 kb on - strand, within H281DRAFT_05808at 85.211 kb on + strand, within H281DRAFT_05808at 85.212 kb on - strand, within H281DRAFT_05808at 85.699 kb on + strand, within H281DRAFT_05808at 85.699 kb on + strand, within H281DRAFT_05808at 85.718 kb on + strand, within H281DRAFT_05808at 85.856 kb on + strandat 85.856 kb on + strandat 85.922 kb on + strandat 85.923 kb on - strandat 85.990 kb on - strandat 86.103 kb on + strandat 86.123 kb on + strandat 86.124 kb on - strandat 86.259 kb on - strandat 86.328 kb on + strandat 86.333 kb on - strandat 86.582 kb on + strand, within H281DRAFT_05809at 86.583 kb on - strand, within H281DRAFT_05809at 86.583 kb on - strand, within H281DRAFT_05809at 86.620 kb on - strand, within H281DRAFT_05809at 86.621 kb on + strand, within H281DRAFT_05809

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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83,408 + H281DRAFT_05807 0.30 +1.2
83,418 + H281DRAFT_05807 0.30 -0.6
83,438 + H281DRAFT_05807 0.32 -0.3
83,448 + H281DRAFT_05807 0.33 +0.7
83,448 + H281DRAFT_05807 0.33 +0.5
83,449 - H281DRAFT_05807 0.33 -1.2
83,449 - H281DRAFT_05807 0.33 +0.3
83,575 + H281DRAFT_05807 0.44 -1.9
83,575 + H281DRAFT_05807 0.44 -0.8
83,576 - H281DRAFT_05807 0.44 +0.0
83,604 + H281DRAFT_05807 0.46 -0.9
83,605 - H281DRAFT_05807 0.46 -0.2
83,751 + H281DRAFT_05807 0.59 -0.8
83,812 + -0.1
83,812 + H281DRAFT_05807 0.64 -0.1
83,812 + H281DRAFT_05807 0.64 +0.7
83,812 + H281DRAFT_05807 0.64 -0.6
83,812 + H281DRAFT_05807 0.64 -0.5
83,812 + H281DRAFT_05807 0.64 +0.1
83,812 + H281DRAFT_05807 0.64 -0.8
83,813 - -0.1
83,813 - H281DRAFT_05807 0.64 +0.2
83,813 - H281DRAFT_05807 0.64 +0.8
83,813 - H281DRAFT_05807 0.64 +0.0
83,813 - H281DRAFT_05807 0.64 +0.8
83,815 - H281DRAFT_05807 0.64 -0.4
83,815 - H281DRAFT_05807 0.64 -0.5
83,924 + H281DRAFT_05807 0.74 -0.4
83,924 + +0.9
83,925 - H281DRAFT_05807 0.74 -0.7
84,248 + -0.7
84,768 - H281DRAFT_05808 0.30 -0.5
84,768 - H281DRAFT_05808 0.30 +1.0
84,845 + H281DRAFT_05808 0.34 +0.2
84,846 - H281DRAFT_05808 0.35 +0.1
84,876 + H281DRAFT_05808 0.36 +0.7
84,877 - H281DRAFT_05808 0.36 +0.5
84,880 + H281DRAFT_05808 0.37 +0.7
84,880 + H281DRAFT_05808 0.37 +0.7
84,934 + H281DRAFT_05808 0.40 -0.3
85,093 - H281DRAFT_05808 0.49 +0.7
85,211 + H281DRAFT_05808 0.56 +0.1
85,212 - H281DRAFT_05808 0.56 +1.4
85,699 + H281DRAFT_05808 0.84 +0.1
85,699 + H281DRAFT_05808 0.84 +0.5
85,718 + H281DRAFT_05808 0.85 +0.0
85,856 + -0.2
85,856 + +0.5
85,922 + +1.7
85,923 - +0.3
85,990 - +0.5
86,103 + -0.1
86,123 + -0.3
86,124 - -0.4
86,259 - +0.8
86,328 + +1.0
86,333 - -0.9
86,582 + H281DRAFT_05809 0.33 +0.9
86,583 - H281DRAFT_05809 0.33 +1.5
86,583 - H281DRAFT_05809 0.33 +0.1
86,620 - H281DRAFT_05809 0.37 -0.5
86,621 + H281DRAFT_05809 0.37 -0.0

Or see this region's nucleotide sequence