Experiment: 2'-Deoxyinosine 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05405 and H281DRAFT_05406 are separated by 40 nucleotides H281DRAFT_05406 and H281DRAFT_05407 overlap by 4 nucleotides H281DRAFT_05407 and H281DRAFT_05408 are separated by 77 nucleotides
H281DRAFT_05405: H281DRAFT_05405 - putative spermidine/putrescine transport system ATP-binding protein, at 168,316 to 169,392
_05405
H281DRAFT_05406: H281DRAFT_05406 - putative spermidine/putrescine transport system permease protein, at 169,433 to 170,323
_05406
H281DRAFT_05407: H281DRAFT_05407 - putative spermidine/putrescine transport system permease protein, at 170,320 to 171,243
_05407
H281DRAFT_05408: H281DRAFT_05408 - putative spermidine/putrescine transport system substrate-binding protein, at 171,321 to 172,415
_05408
Position (kb) 169
170
171 Strain fitness (log2 ratio) -1
0
1
2
3 at 168.433 kb on - strand, within H281DRAFT_05405 at 168.662 kb on + strand, within H281DRAFT_05405 at 168.663 kb on - strand, within H281DRAFT_05405 at 168.678 kb on + strand, within H281DRAFT_05405 at 168.678 kb on + strand, within H281DRAFT_05405 at 168.729 kb on - strand, within H281DRAFT_05405 at 168.729 kb on - strand, within H281DRAFT_05405 at 169.343 kb on + strand at 169.343 kb on + strand at 169.343 kb on + strand at 169.343 kb on + strand at 169.557 kb on + strand, within H281DRAFT_05406 at 169.593 kb on + strand, within H281DRAFT_05406 at 169.896 kb on + strand, within H281DRAFT_05406 at 170.407 kb on + strand at 170.742 kb on - strand, within H281DRAFT_05407 at 170.832 kb on - strand, within H281DRAFT_05407 at 171.029 kb on + strand, within H281DRAFT_05407
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C) remove 168,433 - H281DRAFT_05405 0.11 +0.1 168,662 + H281DRAFT_05405 0.32 +1.0 168,663 - H281DRAFT_05405 0.32 +0.4 168,678 + H281DRAFT_05405 0.34 -1.7 168,678 + H281DRAFT_05405 0.34 -0.5 168,729 - H281DRAFT_05405 0.38 +0.8 168,729 - H281DRAFT_05405 0.38 +0.2 169,343 + +0.4 169,343 + +1.4 169,343 + -0.1 169,343 + +3.1 169,557 + H281DRAFT_05406 0.14 +1.2 169,593 + H281DRAFT_05406 0.18 +0.5 169,896 + H281DRAFT_05406 0.52 +0.4 170,407 + +0.3 170,742 - H281DRAFT_05407 0.46 -0.0 170,832 - H281DRAFT_05407 0.55 -0.3 171,029 + H281DRAFT_05407 0.77 +0.4
Or see this region's nucleotide sequence