Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05288

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05287 and H281DRAFT_05288 are separated by 262 nucleotidesH281DRAFT_05288 and H281DRAFT_05289 are separated by 28 nucleotides H281DRAFT_05287: H281DRAFT_05287 - porin, OprB family, at 29,560 to 31,119 _05287 H281DRAFT_05288: H281DRAFT_05288 - hypothetical protein, at 31,382 to 32,065 _05288 H281DRAFT_05289: H281DRAFT_05289 - N-hydroxyarylamine O-acetyltransferase, at 32,094 to 32,930 _05289 Position (kb) 31 32 33Strain fitness (log2 ratio) -1 0 1at 30.389 kb on + strand, within H281DRAFT_05287at 31.131 kb on + strandat 31.132 kb on - strandat 31.246 kb on + strandat 31.246 kb on + strandat 31.286 kb on + strandat 31.367 kb on + strandat 31.377 kb on + strandat 31.378 kb on - strandat 31.378 kb on - strandat 31.381 kb on + strandat 31.381 kb on + strandat 31.547 kb on + strand, within H281DRAFT_05288at 31.548 kb on - strand, within H281DRAFT_05288at 31.935 kb on - strand, within H281DRAFT_05288at 31.935 kb on - strand, within H281DRAFT_05288at 31.995 kb on + strand, within H281DRAFT_05288at 32.094 kb on - strandat 32.335 kb on + strand, within H281DRAFT_05289at 32.418 kb on - strand, within H281DRAFT_05289at 32.796 kb on - strand, within H281DRAFT_05289at 32.929 kb on - strandat 32.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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30,389 + H281DRAFT_05287 0.53 -1.3
31,131 + +0.3
31,132 - +0.0
31,246 + -0.3
31,246 + +1.3
31,286 + -0.4
31,367 + +0.4
31,377 + +0.4
31,378 - +0.3
31,378 - +0.3
31,381 + -0.2
31,381 + +1.4
31,547 + H281DRAFT_05288 0.24 +0.5
31,548 - H281DRAFT_05288 0.24 -0.4
31,935 - H281DRAFT_05288 0.81 +0.6
31,935 - H281DRAFT_05288 0.81 -0.6
31,995 + H281DRAFT_05288 0.90 +0.5
32,094 - -0.5
32,335 + H281DRAFT_05289 0.29 +0.7
32,418 - H281DRAFT_05289 0.39 +1.2
32,796 - H281DRAFT_05289 0.84 +1.1
32,929 - +0.2
32,971 - -0.1

Or see this region's nucleotide sequence