Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04915

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04914 and H281DRAFT_04915 are separated by 39 nucleotidesH281DRAFT_04915 and H281DRAFT_04916 are separated by 122 nucleotides H281DRAFT_04914: H281DRAFT_04914 - CheW protein, at 74,259 to 75,233 _04914 H281DRAFT_04915: H281DRAFT_04915 - asparaginase, at 75,273 to 76,379 _04915 H281DRAFT_04916: H281DRAFT_04916 - Imidazolonepropionase, at 76,502 to 77,749 _04916 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 74.694 kb on + strand, within H281DRAFT_04914at 75.153 kb on + strandat 75.154 kb on - strandat 75.154 kb on - strandat 75.351 kb on - strandat 75.615 kb on + strand, within H281DRAFT_04915at 75.674 kb on - strand, within H281DRAFT_04915at 76.020 kb on + strand, within H281DRAFT_04915at 76.268 kb on - strand, within H281DRAFT_04915at 76.444 kb on + strandat 76.445 kb on - strandat 76.557 kb on + strandat 76.824 kb on + strand, within H281DRAFT_04916at 76.927 kb on - strand, within H281DRAFT_04916at 77.058 kb on + strand, within H281DRAFT_04916at 77.059 kb on - strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916at 77.076 kb on + strand, within H281DRAFT_04916

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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74,694 + H281DRAFT_04914 0.45 -0.7
75,153 + +1.9
75,154 - -0.2
75,154 - -0.0
75,351 - -0.3
75,615 + H281DRAFT_04915 0.31 -3.4
75,674 - H281DRAFT_04915 0.36 +1.3
76,020 + H281DRAFT_04915 0.67 -0.7
76,268 - H281DRAFT_04915 0.90 -0.4
76,444 + +0.2
76,445 - +3.3
76,557 + -0.0
76,824 + H281DRAFT_04916 0.26 -0.5
76,927 - H281DRAFT_04916 0.34 +0.2
77,058 + H281DRAFT_04916 0.45 -0.6
77,059 - H281DRAFT_04916 0.45 -0.2
77,076 + H281DRAFT_04916 0.46 -0.6
77,076 + H281DRAFT_04916 0.46 +2.5
77,076 + H281DRAFT_04916 0.46 +0.6

Or see this region's nucleotide sequence