Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04404

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04403 and H281DRAFT_04404 are separated by 230 nucleotidesH281DRAFT_04404 and H281DRAFT_04405 are separated by 11 nucleotidesH281DRAFT_04405 and H281DRAFT_04406 are separated by 142 nucleotides H281DRAFT_04403: H281DRAFT_04403 - carbamoyl-phosphate synthase large subunit, at 119,446 to 122,700 _04403 H281DRAFT_04404: H281DRAFT_04404 - GreA/GreB family elongation factor, at 122,931 to 123,407 _04404 H281DRAFT_04405: H281DRAFT_04405 - protein of unknown function (DUF4149), at 123,419 to 123,937 _04405 H281DRAFT_04406: H281DRAFT_04406 - putative RNA-binding protein, YhbY family, at 124,080 to 124,607 _04406 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1at 122.672 kb on + strandat 122.673 kb on - strandat 122.725 kb on + strandat 122.725 kb on + strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.726 kb on - strandat 122.804 kb on + strandat 122.930 kb on + strandat 122.939 kb on + strandat 122.940 kb on - strandat 122.940 kb on - strandat 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.072 kb on + strand, within H281DRAFT_04404at 123.378 kb on + strandat 123.379 kb on - strandat 123.395 kb on + strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.396 kb on - strandat 123.399 kb on + strandat 123.701 kb on + strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.780 kb on - strand, within H281DRAFT_04405at 123.824 kb on + strand, within H281DRAFT_04405at 123.825 kb on - strand, within H281DRAFT_04405at 123.825 kb on - strand, within H281DRAFT_04405at 123.935 kb on + strandat 123.936 kb on - strandat 124.045 kb on - strandat 124.081 kb on + strandat 124.081 kb on + strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.082 kb on - strandat 124.349 kb on + strand, within H281DRAFT_04406at 124.367 kb on + strand, within H281DRAFT_04406

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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122,672 + -1.1
122,673 - -1.6
122,725 + +0.3
122,725 + +0.3
122,726 - -1.0
122,726 - -1.3
122,726 - -0.1
122,726 - +1.6
122,726 - -1.1
122,804 + -0.4
122,930 + +0.1
122,939 + -0.3
122,940 - +0.1
122,940 - -0.1
123,072 + H281DRAFT_04404 0.30 -1.3
123,072 + H281DRAFT_04404 0.30 -1.8
123,072 + H281DRAFT_04404 0.30 -0.3
123,378 + -0.6
123,379 - +0.2
123,395 + -0.5
123,396 - -0.3
123,396 - -0.7
123,396 - -1.6
123,399 + +0.1
123,701 + H281DRAFT_04405 0.54 +0.5
123,780 - H281DRAFT_04405 0.70 -0.3
123,780 - H281DRAFT_04405 0.70 +0.6
123,780 - H281DRAFT_04405 0.70 +0.3
123,780 - H281DRAFT_04405 0.70 -0.3
123,780 - H281DRAFT_04405 0.70 +0.7
123,780 - H281DRAFT_04405 0.70 +0.3
123,824 + H281DRAFT_04405 0.78 +0.4
123,825 - H281DRAFT_04405 0.78 +0.4
123,825 - H281DRAFT_04405 0.78 -0.3
123,935 + +0.6
123,936 - -2.1
124,045 - +0.5
124,081 + -0.6
124,081 + +0.1
124,082 - -1.5
124,082 - +0.8
124,082 - -0.6
124,349 + H281DRAFT_04406 0.51 -2.1
124,367 + H281DRAFT_04406 0.54 +0.4

Or see this region's nucleotide sequence