Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03155

Experiment: 2'-Deoxyinosine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03154 and H281DRAFT_03155 are separated by 328 nucleotidesH281DRAFT_03155 and H281DRAFT_03156 overlap by 4 nucleotides H281DRAFT_03154: H281DRAFT_03154 - two-component system, NarL family, sensor kinase, at 192,361 to 193,782 _03154 H281DRAFT_03155: H281DRAFT_03155 - Protein of unknown function (DUF3311), at 194,111 to 194,308 _03155 H281DRAFT_03156: H281DRAFT_03156 - solute:Na+ symporter, SSS family, at 194,305 to 195,786 _03156 Position (kb) 194 195Strain fitness (log2 ratio) -1 0 1 2 3at 193.284 kb on - strand, within H281DRAFT_03154at 193.341 kb on - strand, within H281DRAFT_03154at 193.476 kb on - strand, within H281DRAFT_03154at 193.728 kb on + strandat 193.814 kb on - strandat 193.834 kb on - strandat 193.869 kb on + strandat 193.870 kb on - strandat 193.872 kb on + strandat 193.873 kb on - strandat 193.962 kb on - strandat 194.094 kb on - strandat 194.094 kb on - strandat 194.099 kb on + strandat 194.195 kb on + strand, within H281DRAFT_03155at 194.282 kb on + strand, within H281DRAFT_03155at 194.572 kb on - strand, within H281DRAFT_03156at 194.765 kb on + strand, within H281DRAFT_03156at 194.835 kb on + strand, within H281DRAFT_03156at 195.160 kb on - strand, within H281DRAFT_03156

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
remove
193,284 - H281DRAFT_03154 0.65 +1.1
193,341 - H281DRAFT_03154 0.69 -0.9
193,476 - H281DRAFT_03154 0.78 +1.5
193,728 + -0.3
193,814 - -0.0
193,834 - +0.7
193,869 + +0.3
193,870 - +0.6
193,872 + +3.2
193,873 - +0.0
193,962 - +0.5
194,094 - +0.6
194,094 - +0.9
194,099 + +0.5
194,195 + H281DRAFT_03155 0.42 +1.1
194,282 + H281DRAFT_03155 0.86 +0.2
194,572 - H281DRAFT_03156 0.18 -0.2
194,765 + H281DRAFT_03156 0.31 +0.2
194,835 + H281DRAFT_03156 0.36 -0.3
195,160 - H281DRAFT_03156 0.58 +0.4

Or see this region's nucleotide sequence