Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01898

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01897 and H281DRAFT_01898 are separated by 131 nucleotidesH281DRAFT_01898 and H281DRAFT_01899 are separated by 117 nucleotidesH281DRAFT_01899 and H281DRAFT_01900 are separated by 115 nucleotides H281DRAFT_01897: H281DRAFT_01897 - Acetyl esterase/lipase, at 10,102 to 11,064 _01897 H281DRAFT_01898: H281DRAFT_01898 - CHRD domain-containing protein, at 11,196 to 11,630 _01898 H281DRAFT_01899: H281DRAFT_01899 - hypothetical protein, at 11,748 to 11,867 _01899 H281DRAFT_01900: H281DRAFT_01900 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 11,983 to 13,323 _01900 Position (kb) 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 10.391 kb on + strand, within H281DRAFT_01897at 10.392 kb on - strand, within H281DRAFT_01897at 10.410 kb on + strand, within H281DRAFT_01897at 10.411 kb on - strand, within H281DRAFT_01897at 10.411 kb on - strand, within H281DRAFT_01897at 10.440 kb on + strand, within H281DRAFT_01897at 10.658 kb on + strand, within H281DRAFT_01897at 10.659 kb on - strand, within H281DRAFT_01897at 10.721 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.802 kb on + strand, within H281DRAFT_01897at 10.803 kb on - strand, within H281DRAFT_01897at 10.823 kb on + strand, within H281DRAFT_01897at 10.823 kb on + strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 10.824 kb on - strand, within H281DRAFT_01897at 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.100 kb on - strandat 11.100 kb on - strandat 11.197 kb on + strandat 11.197 kb on + strandat 11.198 kb on - strandat 11.198 kb on - strandat 11.198 kb on - strandat 11.249 kb on + strandat 11.263 kb on + strand, within H281DRAFT_01898at 11.263 kb on + strandat 11.264 kb on - strand, within H281DRAFT_01898at 11.289 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.435 kb on - strand, within H281DRAFT_01898at 11.505 kb on + strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.548 kb on - strand, within H281DRAFT_01898at 11.624 kb on + strandat 11.644 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.695 kb on + strandat 11.695 kb on + strandat 11.695 kb on + strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.741 kb on + strandat 11.742 kb on - strandat 11.775 kb on - strand, within H281DRAFT_01899at 11.793 kb on + strand, within H281DRAFT_01899at 11.834 kb on + strand, within H281DRAFT_01899at 11.835 kb on - strand, within H281DRAFT_01899at 11.835 kb on - strand, within H281DRAFT_01899at 12.057 kb on + strandat 12.087 kb on + strandat 12.373 kb on - strand, within H281DRAFT_01900at 12.373 kb on - strand, within H281DRAFT_01900at 12.425 kb on + strand, within H281DRAFT_01900at 12.597 kb on - strand, within H281DRAFT_01900at 12.604 kb on + strand, within H281DRAFT_01900at 12.604 kb on + strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.615 kb on + strand, within H281DRAFT_01900at 12.615 kb on + strand, within H281DRAFT_01900at 12.616 kb on - strand, within H281DRAFT_01900at 12.616 kb on - strand, within H281DRAFT_01900

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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10,391 + H281DRAFT_01897 0.30 +0.4
10,392 - H281DRAFT_01897 0.30 +0.6
10,410 + H281DRAFT_01897 0.32 +0.6
10,411 - H281DRAFT_01897 0.32 -0.6
10,411 - H281DRAFT_01897 0.32 -0.4
10,440 + H281DRAFT_01897 0.35 +0.2
10,658 + H281DRAFT_01897 0.58 -0.6
10,659 - H281DRAFT_01897 0.58 -1.0
10,721 + H281DRAFT_01897 0.64 +0.2
10,802 + H281DRAFT_01897 0.73 -1.0
10,802 + H281DRAFT_01897 0.73 -2.2
10,802 + H281DRAFT_01897 0.73 +0.2
10,803 - H281DRAFT_01897 0.73 -1.6
10,823 + H281DRAFT_01897 0.75 +0.5
10,823 + H281DRAFT_01897 0.75 -2.0
10,824 - H281DRAFT_01897 0.75 +0.6
10,824 - H281DRAFT_01897 0.75 +0.1
10,824 - H281DRAFT_01897 0.75 +0.4
10,824 - H281DRAFT_01897 0.75 -0.1
11,099 + -0.0
11,099 + +0.6
11,099 + +0.1
11,099 + -0.0
11,100 - +0.7
11,100 - +0.5
11,197 + +0.7
11,197 + -0.4
11,198 - +1.1
11,198 - +0.4
11,198 - +0.2
11,249 + +2.0
11,263 + H281DRAFT_01898 0.15 +0.1
11,263 + -1.4
11,264 - H281DRAFT_01898 0.16 -0.9
11,289 + H281DRAFT_01898 0.21 +0.8
11,434 + H281DRAFT_01898 0.55 +1.0
11,434 + H281DRAFT_01898 0.55 +0.2
11,434 + H281DRAFT_01898 0.55 -1.4
11,434 + H281DRAFT_01898 0.55 -0.5
11,435 - H281DRAFT_01898 0.55 +0.1
11,505 + H281DRAFT_01898 0.71 +0.3
11,506 - H281DRAFT_01898 0.71 -1.7
11,506 - H281DRAFT_01898 0.71 -0.1
11,506 - H281DRAFT_01898 0.71 +0.1
11,548 - H281DRAFT_01898 0.81 -0.5
11,624 + +0.0
11,644 + +0.2
11,692 + -0.6
11,692 + -0.4
11,692 + +0.6
11,692 + +0.1
11,693 - -0.0
11,693 - +0.0
11,693 - -0.2
11,693 - +2.0
11,693 - -0.1
11,695 + -0.1
11,695 + +0.3
11,695 + -0.0
11,696 - -0.2
11,696 - -0.2
11,696 - +3.0
11,696 - +0.1
11,696 - -0.1
11,741 + +0.5
11,742 - -1.3
11,775 - H281DRAFT_01899 0.23 +0.6
11,793 + H281DRAFT_01899 0.38 -0.7
11,834 + H281DRAFT_01899 0.72 -0.5
11,835 - H281DRAFT_01899 0.72 -0.1
11,835 - H281DRAFT_01899 0.72 -2.9
12,057 + +0.1
12,087 + -0.5
12,373 - H281DRAFT_01900 0.29 +0.8
12,373 - H281DRAFT_01900 0.29 +1.4
12,425 + H281DRAFT_01900 0.33 +0.2
12,597 - H281DRAFT_01900 0.46 +0.0
12,604 + H281DRAFT_01900 0.46 +0.1
12,604 + H281DRAFT_01900 0.46 +0.1
12,605 - H281DRAFT_01900 0.46 +0.7
12,605 - H281DRAFT_01900 0.46 +0.1
12,605 - H281DRAFT_01900 0.46 +0.5
12,615 + H281DRAFT_01900 0.47 +0.4
12,615 + H281DRAFT_01900 0.47 -0.4
12,616 - H281DRAFT_01900 0.47 +2.3
12,616 - H281DRAFT_01900 0.47 +0.7

Or see this region's nucleotide sequence