Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01178

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01177 and H281DRAFT_01178 overlap by 14 nucleotidesH281DRAFT_01178 and H281DRAFT_01179 are separated by 44 nucleotidesH281DRAFT_01179 and H281DRAFT_01180 are separated by 78 nucleotides H281DRAFT_01177: H281DRAFT_01177 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 11,447 to 12,685 _01177 H281DRAFT_01178: H281DRAFT_01178 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 12,672 to 13,484 _01178 H281DRAFT_01179: H281DRAFT_01179 - short chain enoyl-CoA hydratase, at 13,529 to 14,302 _01179 H281DRAFT_01180: H281DRAFT_01180 - acyl-CoA dehydrogenase, at 14,381 to 16,669 _01180 Position (kb) 12 13 14Strain fitness (log2 ratio) -1 0 1at 12.889 kb on + strand, within H281DRAFT_01178at 12.890 kb on - strand, within H281DRAFT_01178at 13.914 kb on - strand, within H281DRAFT_01179at 14.007 kb on - strand, within H281DRAFT_01179at 14.196 kb on - strand, within H281DRAFT_01179at 14.293 kb on - strandat 14.309 kb on - strandat 14.348 kb on - strandat 14.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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12,889 + H281DRAFT_01178 0.27 +1.0
12,890 - H281DRAFT_01178 0.27 +0.6
13,914 - H281DRAFT_01179 0.50 -0.0
14,007 - H281DRAFT_01179 0.62 +0.7
14,196 - H281DRAFT_01179 0.86 -0.2
14,293 - +0.2
14,309 - +0.7
14,348 - -0.5
14,359 - +0.7

Or see this region's nucleotide sequence