Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01096

Experiment: 2'-Deoxyinosine 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01095 and H281DRAFT_01096 are separated by 11 nucleotidesH281DRAFT_01096 and H281DRAFT_01097 are separated by 65 nucleotides H281DRAFT_01095: H281DRAFT_01095 - Glyoxylase, beta-lactamase superfamily II, at 1,229,854 to 1,230,843 _01095 H281DRAFT_01096: H281DRAFT_01096 - thioredoxin reductase (NADPH), at 1,230,855 to 1,232,582 _01096 H281DRAFT_01097: H281DRAFT_01097 - Alginate export, at 1,232,648 to 1,234,270 _01097 Position (kb) 1230 1231 1232 1233Strain fitness (log2 ratio) -3 -2 -1 0 1at 1229.963 kb on + strand, within H281DRAFT_01095at 1230.399 kb on + strand, within H281DRAFT_01095at 1230.788 kb on - strandat 1231.294 kb on + strand, within H281DRAFT_01096at 1231.460 kb on - strandat 1231.599 kb on + strand, within H281DRAFT_01096at 1232.638 kb on + strandat 1232.638 kb on + strandat 1232.643 kb on - strandat 1232.794 kb on - strandat 1232.794 kb on - strandat 1233.181 kb on - strand, within H281DRAFT_01097at 1233.304 kb on - strand, within H281DRAFT_01097

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
remove
1,229,963 + H281DRAFT_01095 0.11 +0.8
1,230,399 + H281DRAFT_01095 0.55 +1.4
1,230,788 - -0.7
1,231,294 + H281DRAFT_01096 0.25 -3.1
1,231,460 - +0.6
1,231,599 + H281DRAFT_01096 0.43 +0.6
1,232,638 + +1.4
1,232,638 + +0.4
1,232,643 - -0.8
1,232,794 - +0.1
1,232,794 - +1.6
1,233,181 - H281DRAFT_01097 0.33 -1.7
1,233,304 - H281DRAFT_01097 0.40 -1.4

Or see this region's nucleotide sequence