Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00943

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00942 and H281DRAFT_00943 are separated by 107 nucleotidesH281DRAFT_00943 and H281DRAFT_00944 are separated by 670 nucleotides H281DRAFT_00942: H281DRAFT_00942 - Transposase, at 1,045,965 to 1,047,359 _00942 H281DRAFT_00943: H281DRAFT_00943 - mannose-6-phosphate isomerase, type 2, at 1,047,467 to 1,049,056 _00943 H281DRAFT_00944: H281DRAFT_00944 - putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase, at 1,049,727 to 1,051,124 _00944 Position (kb) 1047 1048 1049 1050Strain fitness (log2 ratio) -1 0 1 2at 1046.782 kb on - strandat 1046.790 kb on + strand, within H281DRAFT_00942at 1046.791 kb on - strand, within H281DRAFT_00942at 1046.819 kb on + strand, within H281DRAFT_00942at 1046.820 kb on - strand, within H281DRAFT_00942at 1046.823 kb on + strand, within H281DRAFT_00942at 1046.920 kb on - strand, within H281DRAFT_00942at 1047.224 kb on + strandat 1047.224 kb on + strandat 1047.225 kb on - strandat 1047.292 kb on + strandat 1047.292 kb on + strandat 1047.293 kb on - strandat 1047.452 kb on - strandat 1047.452 kb on - strandat 1047.464 kb on - strandat 1047.469 kb on - strandat 1047.481 kb on - strandat 1047.481 kb on - strandat 1047.481 kb on - strandat 1047.520 kb on - strandat 1047.601 kb on - strandat 1047.777 kb on + strand, within H281DRAFT_00943at 1047.778 kb on - strand, within H281DRAFT_00943at 1047.842 kb on - strand, within H281DRAFT_00943at 1048.326 kb on + strand, within H281DRAFT_00943at 1048.345 kb on - strand, within H281DRAFT_00943at 1048.512 kb on + strand, within H281DRAFT_00943at 1048.561 kb on + strand, within H281DRAFT_00943at 1049.269 kb on - strandat 1049.470 kb on - strandat 1049.652 kb on - strandat 1049.895 kb on + strand, within H281DRAFT_00944

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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1,046,782 - +0.6
1,046,790 + H281DRAFT_00942 0.59 -0.1
1,046,791 - H281DRAFT_00942 0.59 -0.7
1,046,819 + H281DRAFT_00942 0.61 +2.2
1,046,820 - H281DRAFT_00942 0.61 -0.2
1,046,823 + H281DRAFT_00942 0.62 -0.9
1,046,920 - H281DRAFT_00942 0.68 +0.0
1,047,224 + -0.2
1,047,224 + -0.5
1,047,225 - +0.0
1,047,292 + +0.1
1,047,292 + +0.4
1,047,293 - +0.1
1,047,452 - +0.2
1,047,452 - -1.3
1,047,464 - +0.0
1,047,469 - +2.5
1,047,481 - +0.1
1,047,481 - -1.3
1,047,481 - -0.2
1,047,520 - +0.0
1,047,601 - -1.2
1,047,777 + H281DRAFT_00943 0.19 -0.9
1,047,778 - H281DRAFT_00943 0.20 +0.9
1,047,842 - H281DRAFT_00943 0.24 -1.0
1,048,326 + H281DRAFT_00943 0.54 +0.5
1,048,345 - H281DRAFT_00943 0.55 +1.2
1,048,512 + H281DRAFT_00943 0.66 -0.2
1,048,561 + H281DRAFT_00943 0.69 +0.7
1,049,269 - -0.2
1,049,470 - -0.0
1,049,652 - -1.2
1,049,895 + H281DRAFT_00944 0.12 +0.7

Or see this region's nucleotide sequence