Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00926

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00925 and H281DRAFT_00926 are separated by 121 nucleotidesH281DRAFT_00926 and H281DRAFT_00927 are separated by 77 nucleotides H281DRAFT_00925: H281DRAFT_00925 - Uncharacterized conserved protein, contains NRDE domain, at 1,028,870 to 1,029,751 _00925 H281DRAFT_00926: H281DRAFT_00926 - hypothetical protein, at 1,029,873 to 1,031,009 _00926 H281DRAFT_00927: H281DRAFT_00927 - UPF0755 protein, at 1,031,087 to 1,032,097 _00927 Position (kb) 1029 1030 1031 1032Strain fitness (log2 ratio) -2 -1 0 1 2at 1028.999 kb on + strand, within H281DRAFT_00925at 1029.000 kb on - strand, within H281DRAFT_00925at 1029.031 kb on - strand, within H281DRAFT_00925at 1029.266 kb on - strand, within H281DRAFT_00925at 1029.287 kb on - strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.354 kb on + strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.355 kb on - strand, within H281DRAFT_00925at 1029.387 kb on + strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.388 kb on - strand, within H281DRAFT_00925at 1029.541 kb on - strand, within H281DRAFT_00925at 1029.541 kb on - strand, within H281DRAFT_00925at 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.743 kb on + strandat 1029.744 kb on - strandat 1029.744 kb on - strandat 1029.744 kb on - strandat 1031.056 kb on - strandat 1031.056 kb on - strandat 1031.060 kb on + strandat 1031.060 kb on + strandat 1031.060 kb on + strandat 1031.060 kb on + strandat 1031.414 kb on + strand, within H281DRAFT_00927at 1031.588 kb on + strand, within H281DRAFT_00927at 1031.624 kb on + strand, within H281DRAFT_00927at 1031.624 kb on + strand, within H281DRAFT_00927at 1031.696 kb on + strand, within H281DRAFT_00927at 1031.708 kb on + strand, within H281DRAFT_00927at 1031.709 kb on - strand, within H281DRAFT_00927at 1031.840 kb on + strand, within H281DRAFT_00927at 1031.908 kb on + strand, within H281DRAFT_00927at 1031.912 kb on + strand, within H281DRAFT_00927at 1031.914 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927at 1031.941 kb on + strand, within H281DRAFT_00927

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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1,028,999 + H281DRAFT_00925 0.15 -1.5
1,029,000 - H281DRAFT_00925 0.15 +1.6
1,029,031 - H281DRAFT_00925 0.18 +0.1
1,029,266 - H281DRAFT_00925 0.45 -0.8
1,029,287 - H281DRAFT_00925 0.47 -0.1
1,029,354 + H281DRAFT_00925 0.55 -0.3
1,029,354 + H281DRAFT_00925 0.55 +0.5
1,029,354 + H281DRAFT_00925 0.55 +1.2
1,029,355 - H281DRAFT_00925 0.55 -0.2
1,029,355 - H281DRAFT_00925 0.55 +1.0
1,029,355 - H281DRAFT_00925 0.55 +0.5
1,029,387 + H281DRAFT_00925 0.59 -0.9
1,029,388 - H281DRAFT_00925 0.59 +1.2
1,029,388 - H281DRAFT_00925 0.59 +1.2
1,029,388 - H281DRAFT_00925 0.59 -0.5
1,029,541 - H281DRAFT_00925 0.76 +0.8
1,029,541 - H281DRAFT_00925 0.76 -0.4
1,029,743 + +0.1
1,029,743 + +0.3
1,029,743 + +0.4
1,029,744 - -0.1
1,029,744 - +0.2
1,029,744 - +0.4
1,031,056 - -0.4
1,031,056 - -2.0
1,031,060 + +0.4
1,031,060 + -0.6
1,031,060 + +0.3
1,031,060 + +0.3
1,031,414 + H281DRAFT_00927 0.32 +1.3
1,031,588 + H281DRAFT_00927 0.50 +0.5
1,031,624 + H281DRAFT_00927 0.53 +1.3
1,031,624 + H281DRAFT_00927 0.53 +0.0
1,031,696 + H281DRAFT_00927 0.60 +1.4
1,031,708 + H281DRAFT_00927 0.61 +0.6
1,031,709 - H281DRAFT_00927 0.62 -0.2
1,031,840 + H281DRAFT_00927 0.74 +1.4
1,031,908 + H281DRAFT_00927 0.81 +0.6
1,031,912 + H281DRAFT_00927 0.82 +1.2
1,031,914 + H281DRAFT_00927 0.82 +1.8
1,031,941 + H281DRAFT_00927 0.84 +2.4
1,031,941 + H281DRAFT_00927 0.84 +0.9
1,031,941 + H281DRAFT_00927 0.84 +1.1

Or see this region's nucleotide sequence