Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00863

Experiment: 2'-Deoxyinosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00862 and H281DRAFT_00863 overlap by 4 nucleotidesH281DRAFT_00863 and H281DRAFT_00864 overlap by 4 nucleotides H281DRAFT_00862: H281DRAFT_00862 - DNA end-binding protein Ku, at 953,792 to 954,820 _00862 H281DRAFT_00863: H281DRAFT_00863 - hypothetical protein, at 954,817 to 954,963 _00863 H281DRAFT_00864: H281DRAFT_00864 - ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module, at 954,960 to 957,980 _00864 Position (kb) 954 955Strain fitness (log2 ratio) -1 0 1 2at 953.924 kb on + strand, within H281DRAFT_00862at 954.005 kb on + strandat 954.005 kb on + strand, within H281DRAFT_00862at 954.005 kb on + strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.006 kb on - strand, within H281DRAFT_00862at 954.068 kb on - strand, within H281DRAFT_00862at 954.159 kb on - strand, within H281DRAFT_00862at 954.425 kb on + strand, within H281DRAFT_00862at 954.745 kb on + strandat 954.982 kb on - strandat 954.982 kb on - strandat 954.982 kb on - strandat 955.092 kb on + strandat 955.509 kb on + strand, within H281DRAFT_00864at 955.509 kb on + strand, within H281DRAFT_00864at 955.510 kb on - strand, within H281DRAFT_00864at 955.510 kb on - strand, within H281DRAFT_00864at 955.745 kb on - strand, within H281DRAFT_00864

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 10 mM (C)
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953,924 + H281DRAFT_00862 0.13 -0.3
954,005 + -0.4
954,005 + H281DRAFT_00862 0.21 +0.4
954,005 + H281DRAFT_00862 0.21 +0.5
954,006 - H281DRAFT_00862 0.21 -1.0
954,006 - H281DRAFT_00862 0.21 -0.8
954,006 - H281DRAFT_00862 0.21 +0.2
954,068 - H281DRAFT_00862 0.27 +0.3
954,159 - H281DRAFT_00862 0.36 -0.1
954,425 + H281DRAFT_00862 0.62 -0.1
954,745 + +1.2
954,982 - +1.8
954,982 - -0.0
954,982 - -0.0
955,092 + -0.6
955,509 + H281DRAFT_00864 0.18 +0.0
955,509 + H281DRAFT_00864 0.18 -0.1
955,510 - H281DRAFT_00864 0.18 +0.6
955,510 - H281DRAFT_00864 0.18 +0.8
955,745 - H281DRAFT_00864 0.26 -0.3

Or see this region's nucleotide sequence