Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19265

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19260 and CSW01_19265 are separated by 203 nucleotidesCSW01_19265 and CSW01_19270 are separated by 93 nucleotides CSW01_19260: CSW01_19260 - methyl-accepting chemotaxis protein, at 982,189 to 984,168 _19260 CSW01_19265: CSW01_19265 - DUF3297 domain-containing protein, at 984,372 to 984,620 _19265 CSW01_19270: CSW01_19270 - 3-deoxy-7-phosphoheptulonate synthase, at 984,714 to 985,766 _19270 Position (kb) 984 985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 983.456 kb on - strand, within CSW01_19260at 983.528 kb on + strand, within CSW01_19260at 983.537 kb on + strand, within CSW01_19260at 983.581 kb on - strand, within CSW01_19260at 983.581 kb on - strand, within CSW01_19260at 983.826 kb on - strand, within CSW01_19260at 983.828 kb on + strand, within CSW01_19260at 983.836 kb on - strand, within CSW01_19260at 983.836 kb on - strand, within CSW01_19260at 984.030 kb on - strandat 984.038 kb on - strandat 984.048 kb on - strandat 984.086 kb on + strandat 984.086 kb on + strandat 984.088 kb on + strandat 984.153 kb on - strandat 984.156 kb on - strandat 984.157 kb on + strandat 984.287 kb on + strandat 984.311 kb on + strandat 984.332 kb on + strandat 984.332 kb on + strandat 984.332 kb on + strandat 984.340 kb on - strandat 984.340 kb on - strandat 984.340 kb on - strandat 984.404 kb on - strand, within CSW01_19265at 984.459 kb on - strand, within CSW01_19265at 984.507 kb on - strand, within CSW01_19265at 984.517 kb on - strand, within CSW01_19265at 984.537 kb on - strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.571 kb on + strand, within CSW01_19265at 984.579 kb on - strand, within CSW01_19265at 984.579 kb on - strand, within CSW01_19265at 984.584 kb on - strand, within CSW01_19265at 984.629 kb on - strandat 984.758 kb on + strandat 984.837 kb on + strand, within CSW01_19270at 984.940 kb on + strand, within CSW01_19270at 984.948 kb on - strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.950 kb on + strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 984.958 kb on - strand, within CSW01_19270at 985.016 kb on - strand, within CSW01_19270at 985.055 kb on + strand, within CSW01_19270at 985.058 kb on - strand, within CSW01_19270at 985.063 kb on + strand, within CSW01_19270at 985.081 kb on - strand, within CSW01_19270at 985.138 kb on + strand, within CSW01_19270at 985.165 kb on + strand, within CSW01_19270at 985.219 kb on + strand, within CSW01_19270at 985.228 kb on - strand, within CSW01_19270at 985.233 kb on - strand, within CSW01_19270at 985.236 kb on + strand, within CSW01_19270at 985.265 kb on + strand, within CSW01_19270at 985.265 kb on + strand, within CSW01_19270at 985.307 kb on - strand, within CSW01_19270at 985.423 kb on - strand, within CSW01_19270at 985.446 kb on + strand, within CSW01_19270at 985.601 kb on + strand, within CSW01_19270

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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983,456 - CSW01_19260 0.64 +0.7
983,528 + CSW01_19260 0.68 +0.8
983,537 + CSW01_19260 0.68 -0.6
983,581 - CSW01_19260 0.70 -0.3
983,581 - CSW01_19260 0.70 +0.1
983,826 - CSW01_19260 0.83 -2.0
983,828 + CSW01_19260 0.83 -0.7
983,836 - CSW01_19260 0.83 +1.1
983,836 - CSW01_19260 0.83 +0.4
984,030 - -1.1
984,038 - -0.7
984,048 - -0.2
984,086 + -2.9
984,086 + +0.6
984,088 + +1.5
984,153 - +1.2
984,156 - +1.1
984,157 + -1.6
984,287 + -2.0
984,311 + +0.2
984,332 + +0.9
984,332 + +2.1
984,332 + -1.4
984,340 - -3.1
984,340 - -0.8
984,340 - +0.6
984,404 - CSW01_19265 0.13 -2.6
984,459 - CSW01_19265 0.35 +0.2
984,507 - CSW01_19265 0.54 -0.3
984,517 - CSW01_19265 0.58 +0.3
984,537 - CSW01_19265 0.66 -0.9
984,571 + CSW01_19265 0.80 -4.0
984,571 + CSW01_19265 0.80 +0.2
984,571 + CSW01_19265 0.80 +1.3
984,579 - CSW01_19265 0.83 +1.6
984,579 - CSW01_19265 0.83 +0.2
984,584 - CSW01_19265 0.85 -2.4
984,629 - +1.3
984,758 + +0.9
984,837 + CSW01_19270 0.12 +0.3
984,940 + CSW01_19270 0.21 -1.5
984,948 - CSW01_19270 0.22 +0.8
984,950 + CSW01_19270 0.22 -3.2
984,950 + CSW01_19270 0.22 -0.0
984,950 + CSW01_19270 0.22 +1.5
984,950 + CSW01_19270 0.22 +0.9
984,950 + CSW01_19270 0.22 +2.7
984,950 + CSW01_19270 0.22 -2.3
984,950 + CSW01_19270 0.22 +0.4
984,950 + CSW01_19270 0.22 +0.9
984,950 + CSW01_19270 0.22 +1.1
984,950 + CSW01_19270 0.22 -1.1
984,950 + CSW01_19270 0.22 +0.3
984,950 + CSW01_19270 0.22 -0.7
984,958 - CSW01_19270 0.23 -2.3
984,958 - CSW01_19270 0.23 -0.7
984,958 - CSW01_19270 0.23 -0.2
984,958 - CSW01_19270 0.23 +0.4
984,958 - CSW01_19270 0.23 +1.9
984,958 - CSW01_19270 0.23 +0.0
984,958 - CSW01_19270 0.23 +1.1
985,016 - CSW01_19270 0.29 -3.1
985,055 + CSW01_19270 0.32 -1.3
985,058 - CSW01_19270 0.33 -1.6
985,063 + CSW01_19270 0.33 +0.7
985,081 - CSW01_19270 0.35 +1.6
985,138 + CSW01_19270 0.40 -1.6
985,165 + CSW01_19270 0.43 +1.3
985,219 + CSW01_19270 0.48 -1.8
985,228 - CSW01_19270 0.49 +0.2
985,233 - CSW01_19270 0.49 -3.3
985,236 + CSW01_19270 0.50 +0.6
985,265 + CSW01_19270 0.52 +1.0
985,265 + CSW01_19270 0.52 -0.9
985,307 - CSW01_19270 0.56 -1.4
985,423 - CSW01_19270 0.67 +0.4
985,446 + CSW01_19270 0.70 -0.6
985,601 + CSW01_19270 0.84 -2.0

Or see this region's nucleotide sequence