Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19040

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19035 and CSW01_19040 are separated by 97 nucleotidesCSW01_19040 and CSW01_19045 are separated by 83 nucleotides CSW01_19035: CSW01_19035 - alpha-hydroxy-acid oxidizing enzyme, at 931,107 to 932,243 _19035 CSW01_19040: CSW01_19040 - FAD-binding oxidoreductase, at 932,341 to 935,220 _19040 CSW01_19045: CSW01_19045 - phosphoenolpyruvate synthase regulatory protein, at 935,304 to 936,137 _19045 Position (kb) 932 933 934 935 936Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 931.411 kb on + strand, within CSW01_19035at 931.470 kb on + strand, within CSW01_19035at 931.617 kb on + strand, within CSW01_19035at 931.630 kb on - strand, within CSW01_19035at 931.638 kb on + strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.646 kb on - strand, within CSW01_19035at 931.735 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.787 kb on + strand, within CSW01_19035at 931.843 kb on + strand, within CSW01_19035at 931.908 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.912 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 931.955 kb on + strand, within CSW01_19035at 932.040 kb on + strand, within CSW01_19035at 932.041 kb on + strand, within CSW01_19035at 932.048 kb on - strand, within CSW01_19035at 932.048 kb on - strand, within CSW01_19035at 932.049 kb on - strand, within CSW01_19035at 932.067 kb on - strand, within CSW01_19035at 932.080 kb on + strand, within CSW01_19035at 932.118 kb on + strand, within CSW01_19035at 932.118 kb on + strand, within CSW01_19035at 932.208 kb on + strandat 932.572 kb on + strandat 932.606 kb on + strandat 932.642 kb on + strand, within CSW01_19040at 932.658 kb on - strand, within CSW01_19040at 932.709 kb on + strand, within CSW01_19040at 932.766 kb on - strand, within CSW01_19040at 932.829 kb on - strand, within CSW01_19040at 932.958 kb on + strand, within CSW01_19040at 932.966 kb on - strand, within CSW01_19040at 932.970 kb on - strand, within CSW01_19040at 933.110 kb on + strand, within CSW01_19040at 933.133 kb on + strand, within CSW01_19040at 933.160 kb on + strand, within CSW01_19040at 933.160 kb on + strand, within CSW01_19040at 933.168 kb on - strand, within CSW01_19040at 933.175 kb on - strand, within CSW01_19040at 933.353 kb on - strand, within CSW01_19040at 933.365 kb on - strand, within CSW01_19040at 933.381 kb on + strand, within CSW01_19040at 933.436 kb on + strand, within CSW01_19040at 933.470 kb on + strand, within CSW01_19040at 933.498 kb on - strand, within CSW01_19040at 933.504 kb on + strand, within CSW01_19040at 933.504 kb on + strand, within CSW01_19040at 933.504 kb on + strand, within CSW01_19040at 933.527 kb on + strand, within CSW01_19040at 933.649 kb on + strand, within CSW01_19040at 933.684 kb on - strand, within CSW01_19040at 933.763 kb on + strand, within CSW01_19040at 933.788 kb on - strand, within CSW01_19040at 933.793 kb on - strand, within CSW01_19040at 933.793 kb on - strand, within CSW01_19040at 933.824 kb on + strand, within CSW01_19040at 933.834 kb on + strand, within CSW01_19040at 933.927 kb on + strand, within CSW01_19040at 934.007 kb on + strand, within CSW01_19040at 934.010 kb on - strand, within CSW01_19040at 934.048 kb on + strand, within CSW01_19040at 934.048 kb on + strand, within CSW01_19040at 934.048 kb on + strand, within CSW01_19040at 934.261 kb on + strand, within CSW01_19040at 934.301 kb on + strand, within CSW01_19040at 934.324 kb on + strand, within CSW01_19040at 934.430 kb on - strand, within CSW01_19040at 934.494 kb on + strand, within CSW01_19040at 934.504 kb on - strand, within CSW01_19040at 934.560 kb on - strand, within CSW01_19040at 934.562 kb on + strand, within CSW01_19040at 934.570 kb on - strand, within CSW01_19040at 934.617 kb on - strand, within CSW01_19040at 934.623 kb on + strand, within CSW01_19040at 934.636 kb on + strand, within CSW01_19040at 934.636 kb on + strand, within CSW01_19040at 934.636 kb on - strand, within CSW01_19040at 934.644 kb on - strand, within CSW01_19040at 934.661 kb on + strand, within CSW01_19040at 934.671 kb on + strand, within CSW01_19040at 934.671 kb on + strand, within CSW01_19040at 934.674 kb on - strand, within CSW01_19040at 934.679 kb on - strand, within CSW01_19040at 934.679 kb on - strand, within CSW01_19040at 934.717 kb on + strand, within CSW01_19040at 934.732 kb on + strand, within CSW01_19040at 934.766 kb on + strand, within CSW01_19040at 934.766 kb on + strand, within CSW01_19040at 934.819 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.847 kb on - strand, within CSW01_19040at 934.847 kb on - strand, within CSW01_19040at 934.898 kb on + strand, within CSW01_19040at 934.929 kb on + strand, within CSW01_19040at 934.929 kb on + strand, within CSW01_19040at 934.937 kb on - strandat 934.937 kb on - strandat 934.937 kb on - strandat 934.937 kb on - strandat 934.943 kb on + strandat 934.953 kb on - strandat 935.064 kb on + strandat 935.121 kb on - strandat 935.123 kb on - strandat 935.183 kb on + strandat 935.187 kb on + strandat 935.192 kb on + strandat 935.197 kb on + strandat 935.200 kb on - strandat 935.200 kb on - strandat 935.319 kb on + strandat 935.377 kb on + strandat 935.472 kb on - strand, within CSW01_19045at 935.528 kb on + strand, within CSW01_19045at 935.697 kb on + strand, within CSW01_19045at 935.730 kb on + strand, within CSW01_19045at 935.733 kb on + strand, within CSW01_19045at 935.738 kb on - strand, within CSW01_19045at 935.843 kb on + strand, within CSW01_19045at 935.845 kb on + strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.901 kb on - strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.944 kb on - strand, within CSW01_19045at 935.970 kb on - strand, within CSW01_19045at 935.979 kb on - strand, within CSW01_19045at 936.053 kb on + strand, within CSW01_19045at 936.110 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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931,411 + CSW01_19035 0.27 +0.1
931,470 + CSW01_19035 0.32 -2.2
931,617 + CSW01_19035 0.45 -2.2
931,630 - CSW01_19035 0.46 +0.6
931,638 + CSW01_19035 0.47 -1.0
931,646 - CSW01_19035 0.47 -0.9
931,646 - CSW01_19035 0.47 -0.2
931,735 + CSW01_19035 0.55 -0.0
931,787 + CSW01_19035 0.60 +0.1
931,787 + CSW01_19035 0.60 -0.9
931,843 + CSW01_19035 0.65 +0.5
931,908 + CSW01_19035 0.70 -2.3
931,912 + CSW01_19035 0.71 +0.3
931,912 + CSW01_19035 0.71 -2.1
931,955 + CSW01_19035 0.75 +1.2
931,955 + CSW01_19035 0.75 +0.4
932,040 + CSW01_19035 0.82 -0.2
932,041 + CSW01_19035 0.82 -0.6
932,048 - CSW01_19035 0.83 +1.1
932,048 - CSW01_19035 0.83 -0.4
932,049 - CSW01_19035 0.83 -2.2
932,067 - CSW01_19035 0.84 -0.5
932,080 + CSW01_19035 0.86 -2.5
932,118 + CSW01_19035 0.89 +2.1
932,118 + CSW01_19035 0.89 -0.2
932,208 + +1.5
932,572 + -0.5
932,606 + -1.1
932,642 + CSW01_19040 0.10 +0.7
932,658 - CSW01_19040 0.11 +1.9
932,709 + CSW01_19040 0.13 -1.2
932,766 - CSW01_19040 0.15 +2.4
932,829 - CSW01_19040 0.17 +1.5
932,958 + CSW01_19040 0.21 +0.4
932,966 - CSW01_19040 0.22 -0.0
932,970 - CSW01_19040 0.22 +0.9
933,110 + CSW01_19040 0.27 +1.5
933,133 + CSW01_19040 0.28 +0.3
933,160 + CSW01_19040 0.28 +0.1
933,160 + CSW01_19040 0.28 -0.3
933,168 - CSW01_19040 0.29 -0.1
933,175 - CSW01_19040 0.29 +1.2
933,353 - CSW01_19040 0.35 -2.5
933,365 - CSW01_19040 0.36 -0.8
933,381 + CSW01_19040 0.36 -0.3
933,436 + CSW01_19040 0.38 +0.1
933,470 + CSW01_19040 0.39 +0.8
933,498 - CSW01_19040 0.40 -2.5
933,504 + CSW01_19040 0.40 -3.0
933,504 + CSW01_19040 0.40 +2.5
933,504 + CSW01_19040 0.40 -0.5
933,527 + CSW01_19040 0.41 -0.0
933,649 + CSW01_19040 0.45 -2.1
933,684 - CSW01_19040 0.47 -1.8
933,763 + CSW01_19040 0.49 -2.2
933,788 - CSW01_19040 0.50 -0.8
933,793 - CSW01_19040 0.50 +0.7
933,793 - CSW01_19040 0.50 +0.8
933,824 + CSW01_19040 0.51 -0.2
933,834 + CSW01_19040 0.52 +0.0
933,927 + CSW01_19040 0.55 +0.9
934,007 + CSW01_19040 0.58 -0.9
934,010 - CSW01_19040 0.58 -0.2
934,048 + CSW01_19040 0.59 -3.5
934,048 + CSW01_19040 0.59 +0.2
934,048 + CSW01_19040 0.59 -1.5
934,261 + CSW01_19040 0.67 +1.9
934,301 + CSW01_19040 0.68 -2.1
934,324 + CSW01_19040 0.69 +1.4
934,430 - CSW01_19040 0.73 -0.4
934,494 + CSW01_19040 0.75 +0.8
934,504 - CSW01_19040 0.75 +0.2
934,560 - CSW01_19040 0.77 -2.4
934,562 + CSW01_19040 0.77 +0.4
934,570 - CSW01_19040 0.77 +0.2
934,617 - CSW01_19040 0.79 -1.4
934,623 + CSW01_19040 0.79 -0.9
934,636 + CSW01_19040 0.80 -2.5
934,636 + CSW01_19040 0.80 +0.2
934,636 - CSW01_19040 0.80 -1.9
934,644 - CSW01_19040 0.80 -3.4
934,661 + CSW01_19040 0.81 -2.8
934,671 + CSW01_19040 0.81 -2.7
934,671 + CSW01_19040 0.81 +0.3
934,674 - CSW01_19040 0.81 +1.0
934,679 - CSW01_19040 0.81 +1.2
934,679 - CSW01_19040 0.81 +3.1
934,717 + CSW01_19040 0.82 -3.2
934,732 + CSW01_19040 0.83 +2.5
934,766 + CSW01_19040 0.84 +0.5
934,766 + CSW01_19040 0.84 -0.9
934,819 + CSW01_19040 0.86 +1.9
934,839 + CSW01_19040 0.87 +0.6
934,839 + CSW01_19040 0.87 -0.0
934,839 + CSW01_19040 0.87 +0.8
934,839 + CSW01_19040 0.87 -3.0
934,839 + CSW01_19040 0.87 -3.1
934,847 - CSW01_19040 0.87 +1.3
934,847 - CSW01_19040 0.87 +1.6
934,898 + CSW01_19040 0.89 +0.9
934,929 + CSW01_19040 0.90 -1.4
934,929 + CSW01_19040 0.90 -2.4
934,937 - -0.8
934,937 - -1.2
934,937 - -0.9
934,937 - +0.8
934,943 + -0.2
934,953 - -1.5
935,064 + -2.2
935,121 - -1.8
935,123 - -0.8
935,183 + +0.9
935,187 + -2.5
935,192 + -1.4
935,197 + -3.9
935,200 - +0.5
935,200 - +0.3
935,319 + +1.0
935,377 + -0.8
935,472 - CSW01_19045 0.20 +1.2
935,528 + CSW01_19045 0.27 -0.3
935,697 + CSW01_19045 0.47 -0.4
935,730 + CSW01_19045 0.51 +0.9
935,733 + CSW01_19045 0.51 +0.5
935,738 - CSW01_19045 0.52 +0.8
935,843 + CSW01_19045 0.65 +1.7
935,845 + CSW01_19045 0.65 +0.3
935,851 - CSW01_19045 0.66 +0.7
935,851 - CSW01_19045 0.66 -0.5
935,851 - CSW01_19045 0.66 +0.7
935,853 + CSW01_19045 0.66 +1.7
935,853 + CSW01_19045 0.66 -0.8
935,853 + CSW01_19045 0.66 -2.1
935,853 + CSW01_19045 0.66 +0.6
935,853 + CSW01_19045 0.66 -0.1
935,853 + CSW01_19045 0.66 -2.3
935,861 - CSW01_19045 0.67 +1.7
935,861 - CSW01_19045 0.67 -0.7
935,861 - CSW01_19045 0.67 +1.1
935,861 - CSW01_19045 0.67 +1.2
935,861 - CSW01_19045 0.67 -0.3
935,861 - CSW01_19045 0.67 -1.1
935,861 - CSW01_19045 0.67 +0.6
935,861 - CSW01_19045 0.67 +0.4
935,861 - CSW01_19045 0.67 -0.2
935,861 - CSW01_19045 0.67 -0.4
935,861 - CSW01_19045 0.67 +1.0
935,901 - CSW01_19045 0.72 -2.3
935,936 + CSW01_19045 0.76 -0.4
935,936 + CSW01_19045 0.76 -3.5
935,936 + CSW01_19045 0.76 +0.2
935,936 + CSW01_19045 0.76 +0.1
935,936 + CSW01_19045 0.76 -1.4
935,944 - CSW01_19045 0.77 -1.4
935,970 - CSW01_19045 0.80 +0.1
935,979 - CSW01_19045 0.81 -1.1
936,053 + CSW01_19045 0.90 +1.9
936,110 + +0.5

Or see this region's nucleotide sequence