Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19005

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19000 and CSW01_19005 are separated by 166 nucleotidesCSW01_19005 and CSW01_19010 are separated by 19 nucleotidesCSW01_19010 and CSW01_19015 are separated by 19 nucleotides CSW01_19000: CSW01_19000 - ABC transporter ATP-binding protein, at 923,072 to 924,691 _19000 CSW01_19005: CSW01_19005 - amino acid ABC transporter substrate-binding protein, at 924,858 to 925,589 _19005 CSW01_19010: CSW01_19010 - methyl-accepting chemotaxis protein, at 925,609 to 926,493 _19010 CSW01_19015: CSW01_19015 - chemotaxis protein, at 926,513 to 927,157 _19015 Position (kb) 924 925 926Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 923.963 kb on - strand, within CSW01_19000at 924.090 kb on - strand, within CSW01_19000at 924.118 kb on + strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.118 kb on - strand, within CSW01_19000at 924.144 kb on + strand, within CSW01_19000at 924.157 kb on - strand, within CSW01_19000at 924.171 kb on - strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.254 kb on + strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.262 kb on - strand, within CSW01_19000at 924.276 kb on - strand, within CSW01_19000at 924.359 kb on + strand, within CSW01_19000at 924.427 kb on + strand, within CSW01_19000at 924.442 kb on + strand, within CSW01_19000at 924.512 kb on + strand, within CSW01_19000at 924.590 kb on + strandat 924.590 kb on + strandat 924.590 kb on + strandat 924.714 kb on + strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.722 kb on - strandat 924.747 kb on + strandat 924.884 kb on - strandat 924.947 kb on + strand, within CSW01_19005at 925.130 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.184 kb on + strand, within CSW01_19005at 925.185 kb on + strand, within CSW01_19005at 925.308 kb on - strand, within CSW01_19005at 925.390 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.422 kb on + strand, within CSW01_19005at 925.430 kb on - strand, within CSW01_19005at 925.532 kb on - strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.553 kb on + strandat 925.561 kb on - strandat 925.563 kb on + strandat 925.563 kb on + strandat 925.571 kb on - strandat 925.571 kb on - strandat 925.613 kb on + strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.621 kb on - strandat 925.630 kb on + strandat 925.630 kb on + strandat 925.696 kb on + strandat 925.696 kb on + strandat 925.704 kb on - strand, within CSW01_19010at 925.762 kb on + strand, within CSW01_19010at 925.891 kb on - strand, within CSW01_19010at 926.075 kb on + strand, within CSW01_19010at 926.213 kb on - strand, within CSW01_19010at 926.244 kb on - strand, within CSW01_19010at 926.308 kb on + strand, within CSW01_19010at 926.313 kb on + strand, within CSW01_19010at 926.316 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.321 kb on - strand, within CSW01_19010at 926.395 kb on + strand, within CSW01_19010at 926.426 kb on - strandat 926.437 kb on - strandat 926.437 kb on - strandat 926.460 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.465 kb on + strandat 926.473 kb on - strandat 926.473 kb on - strandat 926.475 kb on + strandat 926.483 kb on - strandat 926.488 kb on + strandat 926.541 kb on - strandat 926.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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923,963 - CSW01_19000 0.55 -2.3
924,090 - CSW01_19000 0.63 -0.9
924,118 + CSW01_19000 0.65 -1.2
924,118 - CSW01_19000 0.65 -1.3
924,118 - CSW01_19000 0.65 -0.4
924,144 + CSW01_19000 0.66 -1.6
924,157 - CSW01_19000 0.67 -0.1
924,171 - CSW01_19000 0.68 -1.7
924,254 + CSW01_19000 0.73 -1.1
924,254 + CSW01_19000 0.73 -1.6
924,262 - CSW01_19000 0.73 +0.1
924,262 - CSW01_19000 0.73 +1.7
924,276 - CSW01_19000 0.74 +0.1
924,359 + CSW01_19000 0.79 +0.7
924,427 + CSW01_19000 0.84 -1.9
924,442 + CSW01_19000 0.85 -3.7
924,512 + CSW01_19000 0.89 +0.8
924,590 + +0.2
924,590 + -2.6
924,590 + -2.4
924,714 + -0.7
924,722 - -3.4
924,722 - -0.6
924,722 - -1.1
924,747 + -0.1
924,884 - +0.3
924,947 + CSW01_19005 0.12 +1.3
925,130 + CSW01_19005 0.37 -2.6
925,184 + CSW01_19005 0.45 -2.7
925,184 + CSW01_19005 0.45 +1.4
925,185 + CSW01_19005 0.45 +0.2
925,308 - CSW01_19005 0.61 +1.3
925,390 + CSW01_19005 0.73 +1.2
925,422 + CSW01_19005 0.77 +0.5
925,422 + CSW01_19005 0.77 +0.7
925,422 + CSW01_19005 0.77 -2.5
925,422 + CSW01_19005 0.77 +0.4
925,430 - CSW01_19005 0.78 +0.6
925,532 - +0.1
925,553 + -3.5
925,553 + +0.8
925,553 + +0.2
925,553 + +1.3
925,553 + +0.4
925,553 + +1.0
925,553 + +0.8
925,561 - -2.6
925,563 + +0.6
925,563 + +0.4
925,571 - +1.5
925,571 - +1.3
925,613 + -0.3
925,621 - +1.0
925,621 - +0.4
925,621 - -2.0
925,621 - +0.5
925,630 + -2.0
925,630 + +1.2
925,696 + -0.3
925,696 + -2.4
925,704 - CSW01_19010 0.11 -0.5
925,762 + CSW01_19010 0.17 -1.9
925,891 - CSW01_19010 0.32 -0.4
926,075 + CSW01_19010 0.53 +1.5
926,213 - CSW01_19010 0.68 +0.5
926,244 - CSW01_19010 0.72 +4.1
926,308 + CSW01_19010 0.79 +1.8
926,313 + CSW01_19010 0.80 -0.5
926,316 - CSW01_19010 0.80 -0.1
926,321 - CSW01_19010 0.80 +1.4
926,321 - CSW01_19010 0.80 -0.1
926,395 + CSW01_19010 0.89 -0.3
926,426 - +1.1
926,437 - -1.2
926,437 - -1.1
926,460 + +0.2
926,465 + -0.6
926,465 + -1.6
926,465 + +1.3
926,465 + +0.4
926,473 - +1.0
926,473 - -0.6
926,475 + +1.0
926,483 - +2.4
926,488 + +0.5
926,541 - -2.6
926,562 - -0.1

Or see this region's nucleotide sequence