Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18855

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18850 and CSW01_18855 are separated by 74 nucleotidesCSW01_18855 and CSW01_18860 are separated by 672 nucleotides CSW01_18850: CSW01_18850 - maltose ABC transporter permease MalF, at 892,546 to 894,120 _18850 CSW01_18855: CSW01_18855 - maltose/maltodextrin ABC transporter substrate-binding protein MalE, at 894,195 to 895,376 _18855 CSW01_18860: CSW01_18860 - maltose/maltodextrin import ATP-binding protein MalK, at 896,049 to 897,170 _18860 Position (kb) 894 895 896Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 893.341 kb on - strand, within CSW01_18850at 893.436 kb on + strand, within CSW01_18850at 893.458 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.459 kb on + strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.467 kb on - strand, within CSW01_18850at 893.635 kb on - strand, within CSW01_18850at 893.642 kb on - strand, within CSW01_18850at 893.696 kb on + strand, within CSW01_18850at 893.752 kb on + strand, within CSW01_18850at 893.761 kb on + strand, within CSW01_18850at 893.761 kb on + strand, within CSW01_18850at 893.781 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.834 kb on + strand, within CSW01_18850at 893.842 kb on - strand, within CSW01_18850at 893.842 kb on - strand, within CSW01_18850at 893.861 kb on - strand, within CSW01_18850at 893.888 kb on + strand, within CSW01_18850at 893.915 kb on - strand, within CSW01_18850at 893.931 kb on + strand, within CSW01_18850at 893.954 kb on - strand, within CSW01_18850at 893.955 kb on - strand, within CSW01_18850at 894.041 kb on - strandat 894.041 kb on - strandat 894.070 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.089 kb on + strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.097 kb on - strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.103 kb on + strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.111 kb on - strandat 894.225 kb on - strandat 894.408 kb on + strand, within CSW01_18855at 894.423 kb on - strand, within CSW01_18855at 894.505 kb on + strand, within CSW01_18855at 894.513 kb on - strand, within CSW01_18855at 894.530 kb on - strand, within CSW01_18855at 894.547 kb on - strand, within CSW01_18855at 894.643 kb on + strand, within CSW01_18855at 894.654 kb on + strand, within CSW01_18855at 894.662 kb on - strand, within CSW01_18855at 894.672 kb on - strand, within CSW01_18855at 894.672 kb on - strand, within CSW01_18855at 894.696 kb on + strand, within CSW01_18855at 894.748 kb on + strand, within CSW01_18855at 894.834 kb on - strand, within CSW01_18855at 894.859 kb on - strand, within CSW01_18855at 894.913 kb on - strand, within CSW01_18855at 894.934 kb on + strand, within CSW01_18855at 894.941 kb on + strand, within CSW01_18855at 895.128 kb on - strand, within CSW01_18855at 895.349 kb on + strandat 895.352 kb on + strandat 895.352 kb on - strandat 895.357 kb on - strandat 895.362 kb on - strandat 895.362 kb on - strandat 895.419 kb on + strandat 895.471 kb on + strandat 895.478 kb on + strandat 895.478 kb on + strandat 895.617 kb on - strandat 895.621 kb on + strandat 895.624 kb on - strandat 895.628 kb on + strandat 895.633 kb on - strandat 895.761 kb on + strandat 895.838 kb on - strandat 896.089 kb on + strandat 896.090 kb on - strandat 896.145 kb on - strandat 896.157 kb on + strandat 896.191 kb on + strand, within CSW01_18860at 896.191 kb on + strand, within CSW01_18860at 896.210 kb on + strand, within CSW01_18860at 896.346 kb on - strand, within CSW01_18860at 896.352 kb on - strand, within CSW01_18860at 896.354 kb on + strand, within CSW01_18860

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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893,341 - CSW01_18850 0.50 -1.6
893,436 + CSW01_18850 0.57 -0.6
893,458 + CSW01_18850 0.58 +0.2
893,459 + CSW01_18850 0.58 +0.5
893,459 + CSW01_18850 0.58 -0.2
893,459 + CSW01_18850 0.58 -1.4
893,459 + CSW01_18850 0.58 -1.1
893,467 - CSW01_18850 0.58 -3.3
893,467 - CSW01_18850 0.58 +1.0
893,467 - CSW01_18850 0.58 -0.5
893,467 - CSW01_18850 0.58 -1.0
893,635 - CSW01_18850 0.69 +0.9
893,642 - CSW01_18850 0.70 -1.2
893,696 + CSW01_18850 0.73 +0.3
893,752 + CSW01_18850 0.77 -1.3
893,761 + CSW01_18850 0.77 +0.4
893,761 + CSW01_18850 0.77 +0.7
893,781 + CSW01_18850 0.78 +1.4
893,834 + CSW01_18850 0.82 +1.4
893,834 + CSW01_18850 0.82 +2.1
893,834 + CSW01_18850 0.82 -1.5
893,842 - CSW01_18850 0.82 +2.6
893,842 - CSW01_18850 0.82 -0.1
893,861 - CSW01_18850 0.83 -2.4
893,888 + CSW01_18850 0.85 +1.5
893,915 - CSW01_18850 0.87 +2.3
893,931 + CSW01_18850 0.88 -0.1
893,954 - CSW01_18850 0.89 -0.1
893,955 - CSW01_18850 0.89 +2.3
894,041 - -2.1
894,041 - -1.3
894,070 + +0.7
894,089 + +0.4
894,089 + -0.4
894,089 + -0.6
894,089 + -2.2
894,097 - +0.9
894,097 - +0.4
894,097 - +0.2
894,097 - +1.1
894,097 - +1.0
894,097 - +0.8
894,097 - -1.9
894,103 + +1.1
894,103 + +0.0
894,103 + -0.1
894,103 + +1.4
894,111 - -0.1
894,111 - +0.3
894,111 - +0.5
894,111 - -2.1
894,111 - -2.4
894,225 - +2.2
894,408 + CSW01_18855 0.18 +1.1
894,423 - CSW01_18855 0.19 -2.6
894,505 + CSW01_18855 0.26 +0.4
894,513 - CSW01_18855 0.27 +0.2
894,530 - CSW01_18855 0.28 -0.3
894,547 - CSW01_18855 0.30 +0.9
894,643 + CSW01_18855 0.38 -0.0
894,654 + CSW01_18855 0.39 -1.8
894,662 - CSW01_18855 0.40 +0.8
894,672 - CSW01_18855 0.40 -3.4
894,672 - CSW01_18855 0.40 +0.7
894,696 + CSW01_18855 0.42 -1.2
894,748 + CSW01_18855 0.47 -3.1
894,834 - CSW01_18855 0.54 -1.2
894,859 - CSW01_18855 0.56 +0.2
894,913 - CSW01_18855 0.61 +1.4
894,934 + CSW01_18855 0.63 -0.3
894,941 + CSW01_18855 0.63 -0.1
895,128 - CSW01_18855 0.79 -0.2
895,349 + +0.2
895,352 + +1.1
895,352 - -0.6
895,357 - +1.4
895,362 - +1.4
895,362 - -0.0
895,419 + +0.5
895,471 + -0.3
895,478 + -2.1
895,478 + -0.4
895,617 - -0.6
895,621 + +0.2
895,624 - -2.7
895,628 + -0.2
895,633 - +0.4
895,761 + -3.8
895,838 - +1.6
896,089 + -0.3
896,090 - -2.4
896,145 - -2.2
896,157 + -0.9
896,191 + CSW01_18860 0.13 +0.9
896,191 + CSW01_18860 0.13 +0.2
896,210 + CSW01_18860 0.14 +0.6
896,346 - CSW01_18860 0.26 +1.6
896,352 - CSW01_18860 0.27 -1.4
896,354 + CSW01_18860 0.27 +0.2

Or see this region's nucleotide sequence