Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18635 and CSW01_18640 are separated by 155 nucleotides CSW01_18640 and CSW01_18645 are separated by 267 nucleotides
CSW01_18635: CSW01_18635 - phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating), at 850,639 to 852,087
_18635
CSW01_18640: CSW01_18640 - hypothetical protein, at 852,243 to 852,380
_18640
CSW01_18645: CSW01_18645 - MBL fold metallo-hydrolase, at 852,648 to 853,562
_18645
Position (kb) 852
853 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 851.314 kb on + strand, within CSW01_18635 at 851.609 kb on - strand, within CSW01_18635 at 851.645 kb on + strand, within CSW01_18635 at 851.645 kb on + strand, within CSW01_18635 at 851.653 kb on - strand, within CSW01_18635 at 851.658 kb on + strand, within CSW01_18635 at 851.715 kb on - strand, within CSW01_18635 at 851.801 kb on + strand, within CSW01_18635 at 851.868 kb on + strand, within CSW01_18635 at 851.998 kb on - strand at 852.035 kb on - strand at 852.054 kb on + strand at 852.297 kb on + strand, within CSW01_18640 at 852.445 kb on + strand at 852.517 kb on - strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.542 kb on + strand at 852.550 kb on - strand at 852.550 kb on - strand at 852.560 kb on - strand at 852.633 kb on + strand at 852.729 kb on + strand at 852.737 kb on - strand at 852.737 kb on - strand at 852.749 kb on + strand, within CSW01_18645 at 852.749 kb on + strand, within CSW01_18645 at 852.752 kb on - strand, within CSW01_18645 at 852.757 kb on - strand, within CSW01_18645 at 852.757 kb on - strand, within CSW01_18645 at 852.770 kb on + strand, within CSW01_18645 at 852.782 kb on + strand, within CSW01_18645 at 852.790 kb on - strand, within CSW01_18645 at 852.871 kb on + strand, within CSW01_18645 at 852.890 kb on - strand, within CSW01_18645 at 853.135 kb on - strand, within CSW01_18645 at 853.245 kb on + strand, within CSW01_18645 at 853.283 kb on + strand, within CSW01_18645 at 853.309 kb on - strand, within CSW01_18645 at 853.311 kb on + strand, within CSW01_18645 at 853.314 kb on - strand, within CSW01_18645
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 851,314 + CSW01_18635 0.47 -0.4 851,609 - CSW01_18635 0.67 -2.3 851,645 + CSW01_18635 0.69 -2.0 851,645 + CSW01_18635 0.69 -2.0 851,653 - CSW01_18635 0.70 -2.4 851,658 + CSW01_18635 0.70 +0.0 851,715 - CSW01_18635 0.74 -2.4 851,801 + CSW01_18635 0.80 -1.0 851,868 + CSW01_18635 0.85 -0.9 851,998 - +0.6 852,035 - -2.0 852,054 + -2.7 852,297 + CSW01_18640 0.39 -1.2 852,445 + +0.4 852,517 - -3.0 852,542 + -1.2 852,542 + +0.1 852,542 + +0.6 852,542 + +1.0 852,550 - +0.8 852,550 - +0.2 852,560 - -0.8 852,633 + -0.2 852,729 + -2.4 852,737 - +0.4 852,737 - +3.0 852,749 + CSW01_18645 0.11 -0.6 852,749 + CSW01_18645 0.11 +1.0 852,752 - CSW01_18645 0.11 +0.8 852,757 - CSW01_18645 0.12 +0.4 852,757 - CSW01_18645 0.12 -1.4 852,770 + CSW01_18645 0.13 -0.9 852,782 + CSW01_18645 0.15 -0.2 852,790 - CSW01_18645 0.16 -0.4 852,871 + CSW01_18645 0.24 +2.0 852,890 - CSW01_18645 0.26 +0.6 853,135 - CSW01_18645 0.53 -1.0 853,245 + CSW01_18645 0.65 +1.4 853,283 + CSW01_18645 0.69 +1.2 853,309 - CSW01_18645 0.72 +0.6 853,311 + CSW01_18645 0.72 -0.5 853,314 - CSW01_18645 0.73 +0.3
Or see this region's nucleotide sequence