Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18625

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18620 and CSW01_18625 are separated by 343 nucleotidesCSW01_18625 and CSW01_18630 overlap by 4 nucleotidesCSW01_18630 and CSW01_18635 are separated by 13 nucleotides CSW01_18620: CSW01_18620 - metal-dependent phosphohydrolase, at 845,118 to 848,063 _18620 CSW01_18625: CSW01_18625 - glucose-6-phosphate dehydrogenase, at 848,407 to 849,912 _18625 CSW01_18630: CSW01_18630 - 6-phosphogluconolactonase, at 849,909 to 850,625 _18630 CSW01_18635: CSW01_18635 - phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating), at 850,639 to 852,087 _18635 Position (kb) 848 849 850Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 847.411 kb on - strand, within CSW01_18620at 847.458 kb on - strand, within CSW01_18620at 847.567 kb on + strand, within CSW01_18620at 847.570 kb on - strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.586 kb on + strand, within CSW01_18620at 847.656 kb on + strand, within CSW01_18620at 847.664 kb on - strand, within CSW01_18620at 847.665 kb on + strand, within CSW01_18620at 847.673 kb on - strand, within CSW01_18620at 847.681 kb on + strand, within CSW01_18620at 847.786 kb on - strandat 847.786 kb on - strandat 847.801 kb on - strandat 847.821 kb on + strandat 847.836 kb on - strandat 847.844 kb on - strandat 847.861 kb on - strandat 847.861 kb on - strandat 847.861 kb on - strandat 847.890 kb on + strandat 847.915 kb on + strandat 847.915 kb on + strandat 847.915 kb on + strandat 847.943 kb on + strandat 847.951 kb on - strandat 848.107 kb on - strandat 848.187 kb on + strandat 848.210 kb on - strandat 848.340 kb on - strandat 848.340 kb on - strandat 848.341 kb on - strandat 848.468 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.496 kb on + strandat 848.602 kb on - strand, within CSW01_18625at 848.604 kb on - strand, within CSW01_18625at 848.637 kb on - strand, within CSW01_18625at 848.637 kb on - strand, within CSW01_18625at 848.662 kb on + strand, within CSW01_18625at 848.672 kb on + strand, within CSW01_18625at 848.672 kb on + strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.680 kb on - strand, within CSW01_18625at 848.721 kb on + strand, within CSW01_18625at 848.729 kb on - strand, within CSW01_18625at 848.743 kb on - strand, within CSW01_18625at 848.745 kb on + strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.753 kb on - strand, within CSW01_18625at 848.757 kb on + strand, within CSW01_18625at 848.757 kb on + strand, within CSW01_18625at 848.765 kb on - strand, within CSW01_18625at 848.888 kb on + strand, within CSW01_18625at 848.945 kb on + strand, within CSW01_18625at 848.996 kb on - strand, within CSW01_18625at 849.077 kb on + strand, within CSW01_18625at 849.077 kb on + strand, within CSW01_18625at 849.085 kb on - strand, within CSW01_18625at 849.085 kb on - strand, within CSW01_18625at 849.233 kb on + strand, within CSW01_18625at 849.241 kb on - strand, within CSW01_18625at 849.241 kb on - strand, within CSW01_18625at 849.241 kb on - strand, within CSW01_18625at 849.326 kb on + strand, within CSW01_18625at 849.429 kb on + strand, within CSW01_18625at 849.558 kb on - strand, within CSW01_18625at 849.569 kb on + strand, within CSW01_18625at 849.585 kb on + strand, within CSW01_18625at 849.638 kb on + strand, within CSW01_18625at 849.640 kb on + strand, within CSW01_18625at 849.656 kb on - strand, within CSW01_18625at 849.656 kb on - strand, within CSW01_18625at 849.709 kb on + strand, within CSW01_18625at 849.717 kb on - strand, within CSW01_18625at 849.717 kb on - strand, within CSW01_18625at 849.720 kb on + strand, within CSW01_18625at 849.982 kb on - strand, within CSW01_18630at 850.061 kb on + strand, within CSW01_18630at 850.118 kb on - strand, within CSW01_18630at 850.120 kb on + strand, within CSW01_18630at 850.126 kb on - strand, within CSW01_18630at 850.235 kb on + strand, within CSW01_18630at 850.309 kb on + strand, within CSW01_18630at 850.335 kb on - strand, within CSW01_18630at 850.344 kb on + strand, within CSW01_18630at 850.498 kb on - strand, within CSW01_18630at 850.544 kb on - strand, within CSW01_18630at 850.570 kb on + strandat 850.578 kb on - strandat 850.604 kb on - strandat 850.653 kb on - strandat 850.731 kb on + strandat 850.734 kb on - strandat 850.807 kb on + strand, within CSW01_18635at 850.875 kb on - strand, within CSW01_18635

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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847,411 - CSW01_18620 0.78 +0.4
847,458 - CSW01_18620 0.79 +0.8
847,567 + CSW01_18620 0.83 -1.6
847,570 - CSW01_18620 0.83 -2.6
847,586 + CSW01_18620 0.84 -3.0
847,586 + CSW01_18620 0.84 -1.9
847,586 + CSW01_18620 0.84 -0.3
847,656 + CSW01_18620 0.86 +0.0
847,664 - CSW01_18620 0.86 +1.7
847,665 + CSW01_18620 0.86 -3.0
847,673 - CSW01_18620 0.87 -0.3
847,681 + CSW01_18620 0.87 -1.2
847,786 - -1.9
847,786 - -0.2
847,801 - +0.3
847,821 + +1.5
847,836 - -0.0
847,844 - -0.4
847,861 - +0.9
847,861 - +1.4
847,861 - -1.0
847,890 + -0.1
847,915 + +0.5
847,915 + +0.2
847,915 + +1.2
847,943 + -1.9
847,951 - -2.4
848,107 - -0.6
848,187 + -2.7
848,210 - +1.4
848,340 - -1.6
848,340 - -0.3
848,341 - -0.2
848,468 + +0.4
848,496 + -0.1
848,496 + +0.8
848,496 + -1.5
848,496 + -1.5
848,602 - CSW01_18625 0.13 -3.3
848,604 - CSW01_18625 0.13 -2.4
848,637 - CSW01_18625 0.15 -0.0
848,637 - CSW01_18625 0.15 -0.2
848,662 + CSW01_18625 0.17 -1.2
848,672 + CSW01_18625 0.18 -0.4
848,672 + CSW01_18625 0.18 +1.8
848,680 - CSW01_18625 0.18 -1.4
848,680 - CSW01_18625 0.18 -0.9
848,680 - CSW01_18625 0.18 -0.4
848,721 + CSW01_18625 0.21 -1.0
848,729 - CSW01_18625 0.21 -1.7
848,743 - CSW01_18625 0.22 -1.7
848,745 + CSW01_18625 0.22 -1.0
848,753 - CSW01_18625 0.23 -0.0
848,753 - CSW01_18625 0.23 +1.8
848,753 - CSW01_18625 0.23 -1.5
848,757 + CSW01_18625 0.23 +0.5
848,757 + CSW01_18625 0.23 -0.4
848,765 - CSW01_18625 0.24 +1.1
848,888 + CSW01_18625 0.32 +0.6
848,945 + CSW01_18625 0.36 +1.0
848,996 - CSW01_18625 0.39 -1.3
849,077 + CSW01_18625 0.44 -2.1
849,077 + CSW01_18625 0.44 +0.2
849,085 - CSW01_18625 0.45 +0.6
849,085 - CSW01_18625 0.45 -0.8
849,233 + CSW01_18625 0.55 +0.9
849,241 - CSW01_18625 0.55 +0.9
849,241 - CSW01_18625 0.55 -2.5
849,241 - CSW01_18625 0.55 +0.9
849,326 + CSW01_18625 0.61 +0.0
849,429 + CSW01_18625 0.68 +0.2
849,558 - CSW01_18625 0.76 +0.0
849,569 + CSW01_18625 0.77 +0.7
849,585 + CSW01_18625 0.78 -4.0
849,638 + CSW01_18625 0.82 -1.3
849,640 + CSW01_18625 0.82 -0.9
849,656 - CSW01_18625 0.83 +0.4
849,656 - CSW01_18625 0.83 -0.3
849,709 + CSW01_18625 0.86 -3.5
849,717 - CSW01_18625 0.87 +0.1
849,717 - CSW01_18625 0.87 -3.1
849,720 + CSW01_18625 0.87 +0.6
849,982 - CSW01_18630 0.10 +1.3
850,061 + CSW01_18630 0.21 -1.4
850,118 - CSW01_18630 0.29 -1.0
850,120 + CSW01_18630 0.29 -2.4
850,126 - CSW01_18630 0.30 -1.2
850,235 + CSW01_18630 0.45 +0.1
850,309 + CSW01_18630 0.56 +1.0
850,335 - CSW01_18630 0.59 -0.5
850,344 + CSW01_18630 0.61 -1.0
850,498 - CSW01_18630 0.82 -2.0
850,544 - CSW01_18630 0.89 +0.1
850,570 + -0.1
850,578 - -0.5
850,604 - -0.3
850,653 - -0.7
850,731 + -2.0
850,734 - -2.5
850,807 + CSW01_18635 0.12 +0.1
850,875 - CSW01_18635 0.16 -2.5

Or see this region's nucleotide sequence