Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18475 and CSW01_18480 are separated by 234 nucleotides CSW01_18480 and CSW01_18485 are separated by 128 nucleotides
CSW01_18475: CSW01_18475 - D-alanyl-D-alanine endopeptidase, at 819,402 to 820,352
_18475
CSW01_18480: CSW01_18480 - PLP-dependent aminotransferase family protein, at 820,587 to 822,008
_18480
CSW01_18485: CSW01_18485 - cytochrome d terminal oxidase subunit 1, at 822,137 to 823,729
_18485
Position (kb) 820
821
822
823 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 819.757 kb on + strand, within CSW01_18475 at 819.781 kb on + strand, within CSW01_18475 at 819.789 kb on - strand, within CSW01_18475 at 819.846 kb on - strand, within CSW01_18475 at 819.846 kb on - strand, within CSW01_18475 at 819.859 kb on - strand, within CSW01_18475 at 820.137 kb on + strand, within CSW01_18475 at 820.171 kb on - strand, within CSW01_18475 at 820.171 kb on - strand, within CSW01_18475 at 820.219 kb on - strand, within CSW01_18475 at 820.265 kb on + strand at 820.273 kb on - strand at 820.320 kb on - strand at 820.382 kb on - strand at 820.513 kb on + strand at 820.559 kb on - strand at 820.726 kb on - strand at 820.926 kb on - strand, within CSW01_18480 at 820.927 kb on + strand, within CSW01_18480 at 820.969 kb on + strand, within CSW01_18480 at 820.977 kb on - strand, within CSW01_18480 at 821.222 kb on + strand, within CSW01_18480 at 821.230 kb on - strand, within CSW01_18480 at 821.280 kb on + strand, within CSW01_18480 at 821.280 kb on + strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.288 kb on - strand, within CSW01_18480 at 821.361 kb on - strand, within CSW01_18480 at 821.381 kb on + strand, within CSW01_18480 at 821.397 kb on + strand, within CSW01_18480 at 821.505 kb on - strand, within CSW01_18480 at 821.562 kb on - strand, within CSW01_18480 at 821.805 kb on - strand, within CSW01_18480 at 821.807 kb on + strand, within CSW01_18480 at 821.815 kb on - strand, within CSW01_18480 at 821.897 kb on + strand at 821.968 kb on + strand at 821.968 kb on + strand at 821.974 kb on - strand at 822.134 kb on - strand at 822.226 kb on - strand at 822.233 kb on - strand at 822.304 kb on - strand, within CSW01_18485 at 822.510 kb on + strand, within CSW01_18485 at 822.510 kb on + strand, within CSW01_18485 at 822.526 kb on - strand, within CSW01_18485 at 822.541 kb on + strand, within CSW01_18485 at 822.620 kb on + strand, within CSW01_18485 at 822.623 kb on - strand, within CSW01_18485 at 822.623 kb on - strand, within CSW01_18485 at 822.655 kb on - strand, within CSW01_18485 at 822.691 kb on + strand, within CSW01_18485 at 822.691 kb on + strand, within CSW01_18485 at 822.691 kb on + strand, within CSW01_18485 at 822.948 kb on - strand, within CSW01_18485 at 822.967 kb on - strand, within CSW01_18485
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 819,757 + CSW01_18475 0.37 -1.0 819,781 + CSW01_18475 0.40 +1.5 819,789 - CSW01_18475 0.41 +0.5 819,846 - CSW01_18475 0.47 -1.6 819,846 - CSW01_18475 0.47 -1.2 819,859 - CSW01_18475 0.48 +1.2 820,137 + CSW01_18475 0.77 +1.2 820,171 - CSW01_18475 0.81 +0.4 820,171 - CSW01_18475 0.81 -1.8 820,219 - CSW01_18475 0.86 +1.6 820,265 + -2.4 820,273 - +0.1 820,320 - -0.8 820,382 - -0.1 820,513 + -1.7 820,559 - +2.6 820,726 - -1.6 820,926 - CSW01_18480 0.24 +1.3 820,927 + CSW01_18480 0.24 -2.2 820,969 + CSW01_18480 0.27 +0.1 820,977 - CSW01_18480 0.27 -2.2 821,222 + CSW01_18480 0.45 +0.0 821,230 - CSW01_18480 0.45 +1.4 821,280 + CSW01_18480 0.49 +1.0 821,280 + CSW01_18480 0.49 -0.5 821,288 - CSW01_18480 0.49 -1.4 821,288 - CSW01_18480 0.49 +0.3 821,288 - CSW01_18480 0.49 -0.4 821,288 - CSW01_18480 0.49 -2.8 821,361 - CSW01_18480 0.54 +2.1 821,381 + CSW01_18480 0.56 -0.7 821,397 + CSW01_18480 0.57 -0.5 821,505 - CSW01_18480 0.65 +0.8 821,562 - CSW01_18480 0.69 +0.0 821,805 - CSW01_18480 0.86 -2.9 821,807 + CSW01_18480 0.86 +0.9 821,815 - CSW01_18480 0.86 -1.2 821,897 + +0.6 821,968 + +0.9 821,968 + +0.7 821,974 - +1.6 822,134 - +0.5 822,226 - +0.5 822,233 - -2.6 822,304 - CSW01_18485 0.10 -2.5 822,510 + CSW01_18485 0.23 -2.5 822,510 + CSW01_18485 0.23 -2.6 822,526 - CSW01_18485 0.24 +2.1 822,541 + CSW01_18485 0.25 -0.1 822,620 + CSW01_18485 0.30 +1.0 822,623 - CSW01_18485 0.31 +0.3 822,623 - CSW01_18485 0.31 +0.2 822,655 - CSW01_18485 0.33 -1.4 822,691 + CSW01_18485 0.35 -0.2 822,691 + CSW01_18485 0.35 +0.9 822,691 + CSW01_18485 0.35 -1.9 822,948 - CSW01_18485 0.51 -1.2 822,967 - CSW01_18485 0.52 +0.8
Or see this region's nucleotide sequence