Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18225

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18220 and CSW01_18225 are separated by 34 nucleotidesCSW01_18225 and CSW01_18230 are separated by 187 nucleotides CSW01_18220: CSW01_18220 - peptidase, at 755,449 to 756,879 _18220 CSW01_18225: CSW01_18225 - aminopeptidase, at 756,914 to 758,419 _18225 CSW01_18230: CSW01_18230 - agmatinase, at 758,607 to 759,536 _18230 Position (kb) 756 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 755.967 kb on + strand, within CSW01_18220at 755.978 kb on - strand, within CSW01_18220at 755.998 kb on - strand, within CSW01_18220at 756.132 kb on + strand, within CSW01_18220at 756.142 kb on + strand, within CSW01_18220at 756.153 kb on + strand, within CSW01_18220at 756.155 kb on + strand, within CSW01_18220at 756.211 kb on + strand, within CSW01_18220at 756.211 kb on + strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.232 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.612 kb on + strand, within CSW01_18220at 756.620 kb on - strand, within CSW01_18220at 756.733 kb on + strand, within CSW01_18220at 756.734 kb on + strand, within CSW01_18220at 756.742 kb on - strandat 756.748 kb on - strandat 756.790 kb on - strandat 756.823 kb on - strandat 756.943 kb on - strandat 756.943 kb on - strandat 757.017 kb on + strandat 757.036 kb on + strandat 757.062 kb on + strandat 757.077 kb on - strand, within CSW01_18225at 757.146 kb on - strand, within CSW01_18225at 757.148 kb on + strand, within CSW01_18225at 757.157 kb on + strand, within CSW01_18225at 757.165 kb on - strand, within CSW01_18225at 757.165 kb on - strand, within CSW01_18225at 757.172 kb on - strand, within CSW01_18225at 757.172 kb on - strand, within CSW01_18225at 757.257 kb on - strand, within CSW01_18225at 757.270 kb on + strand, within CSW01_18225at 757.278 kb on - strand, within CSW01_18225at 757.280 kb on + strand, within CSW01_18225at 757.283 kb on - strand, within CSW01_18225at 757.283 kb on - strand, within CSW01_18225at 757.335 kb on - strand, within CSW01_18225at 757.335 kb on - strand, within CSW01_18225at 757.408 kb on + strand, within CSW01_18225at 757.466 kb on + strand, within CSW01_18225at 757.474 kb on - strand, within CSW01_18225at 757.655 kb on - strand, within CSW01_18225at 757.786 kb on + strand, within CSW01_18225at 757.795 kb on - strand, within CSW01_18225at 757.844 kb on - strand, within CSW01_18225at 757.855 kb on + strand, within CSW01_18225at 757.893 kb on + strand, within CSW01_18225at 757.992 kb on - strand, within CSW01_18225at 758.034 kb on - strand, within CSW01_18225at 758.088 kb on - strand, within CSW01_18225at 758.181 kb on - strand, within CSW01_18225at 758.591 kb on - strandat 758.595 kb on + strandat 758.648 kb on + strandat 758.656 kb on - strandat 758.728 kb on - strand, within CSW01_18230at 758.743 kb on - strand, within CSW01_18230at 758.789 kb on - strand, within CSW01_18230at 758.814 kb on - strand, within CSW01_18230at 758.857 kb on - strand, within CSW01_18230at 758.916 kb on + strand, within CSW01_18230at 758.949 kb on + strand, within CSW01_18230at 759.007 kb on - strand, within CSW01_18230at 759.033 kb on + strand, within CSW01_18230at 759.039 kb on - strand, within CSW01_18230at 759.039 kb on - strand, within CSW01_18230at 759.159 kb on - strand, within CSW01_18230at 759.159 kb on - strand, within CSW01_18230at 759.382 kb on - strand, within CSW01_18230at 759.408 kb on + strand, within CSW01_18230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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755,967 + CSW01_18220 0.36 -2.3
755,978 - CSW01_18220 0.37 -0.0
755,998 - CSW01_18220 0.38 -2.4
756,132 + CSW01_18220 0.48 -3.3
756,142 + CSW01_18220 0.48 +1.0
756,153 + CSW01_18220 0.49 -1.3
756,155 + CSW01_18220 0.49 -1.1
756,211 + CSW01_18220 0.53 +0.5
756,211 + CSW01_18220 0.53 +1.1
756,219 - CSW01_18220 0.54 -2.3
756,219 - CSW01_18220 0.54 -1.6
756,219 - CSW01_18220 0.54 +1.7
756,219 - CSW01_18220 0.54 -1.0
756,232 + CSW01_18220 0.55 -0.4
756,410 + CSW01_18220 0.67 +0.4
756,410 + CSW01_18220 0.67 -3.1
756,410 + CSW01_18220 0.67 -1.7
756,612 + CSW01_18220 0.81 +0.5
756,620 - CSW01_18220 0.82 -0.7
756,733 + CSW01_18220 0.90 +2.2
756,734 + CSW01_18220 0.90 +0.8
756,742 - +1.5
756,748 - -0.2
756,790 - +1.1
756,823 - +1.2
756,943 - +1.1
756,943 - +0.7
757,017 + +0.5
757,036 + +0.8
757,062 + +1.5
757,077 - CSW01_18225 0.11 +1.4
757,146 - CSW01_18225 0.15 +1.0
757,148 + CSW01_18225 0.16 +2.3
757,157 + CSW01_18225 0.16 +1.0
757,165 - CSW01_18225 0.17 +0.2
757,165 - CSW01_18225 0.17 -0.7
757,172 - CSW01_18225 0.17 -0.1
757,172 - CSW01_18225 0.17 -1.7
757,257 - CSW01_18225 0.23 -0.9
757,270 + CSW01_18225 0.24 +0.1
757,278 - CSW01_18225 0.24 +3.3
757,280 + CSW01_18225 0.24 +0.3
757,283 - CSW01_18225 0.25 +0.5
757,283 - CSW01_18225 0.25 -0.0
757,335 - CSW01_18225 0.28 -3.2
757,335 - CSW01_18225 0.28 -0.0
757,408 + CSW01_18225 0.33 +0.2
757,466 + CSW01_18225 0.37 +0.8
757,474 - CSW01_18225 0.37 -1.5
757,655 - CSW01_18225 0.49 -1.7
757,786 + CSW01_18225 0.58 +1.1
757,795 - CSW01_18225 0.58 +0.0
757,844 - CSW01_18225 0.62 -1.2
757,855 + CSW01_18225 0.62 +2.0
757,893 + CSW01_18225 0.65 +0.8
757,992 - CSW01_18225 0.72 -0.1
758,034 - CSW01_18225 0.74 -0.8
758,088 - CSW01_18225 0.78 +2.4
758,181 - CSW01_18225 0.84 -1.4
758,591 - +1.2
758,595 + +0.4
758,648 + +1.1
758,656 - +2.3
758,728 - CSW01_18230 0.13 +0.9
758,743 - CSW01_18230 0.15 +2.1
758,789 - CSW01_18230 0.20 +1.4
758,814 - CSW01_18230 0.22 +0.7
758,857 - CSW01_18230 0.27 -0.3
758,916 + CSW01_18230 0.33 -1.6
758,949 + CSW01_18230 0.37 -2.1
759,007 - CSW01_18230 0.43 -0.2
759,033 + CSW01_18230 0.46 +1.2
759,039 - CSW01_18230 0.46 +1.8
759,039 - CSW01_18230 0.46 -0.0
759,159 - CSW01_18230 0.59 -0.3
759,159 - CSW01_18230 0.59 +1.8
759,382 - CSW01_18230 0.83 -0.7
759,408 + CSW01_18230 0.86 +1.4

Or see this region's nucleotide sequence