Experiment: ICP1_phage_235.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18040 and CSW01_18045 are separated by 85 nucleotides CSW01_18045 and CSW01_18050 are separated by 12 nucleotides CSW01_18050 and CSW01_18055 are separated by 121 nucleotides
CSW01_18040: CSW01_18040 - methyl-accepting chemotaxis protein, at 713,469 to 714,890
_18040
CSW01_18045: CSW01_18045 - UDP-glucose 4-epimerase GalE, at 714,976 to 715,992
_18045
CSW01_18050: CSW01_18050 - hypothetical protein, at 716,005 to 716,190
_18050
CSW01_18055: CSW01_18055 - hypothetical protein, at 716,312 to 717,052
_18055
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 714.020 kb on + strand, within CSW01_18040 at 714.063 kb on + strand, within CSW01_18040 at 714.071 kb on - strand, within CSW01_18040 at 714.073 kb on + strand, within CSW01_18040 at 714.073 kb on + strand, within CSW01_18040 at 714.079 kb on + strand, within CSW01_18040 at 714.251 kb on - strand, within CSW01_18040 at 714.301 kb on + strand, within CSW01_18040 at 714.374 kb on + strand, within CSW01_18040 at 714.382 kb on - strand, within CSW01_18040 at 714.479 kb on - strand, within CSW01_18040 at 714.618 kb on + strand, within CSW01_18040 at 714.621 kb on - strand, within CSW01_18040 at 714.621 kb on - strand, within CSW01_18040 at 714.650 kb on + strand, within CSW01_18040 at 714.650 kb on + strand, within CSW01_18040 at 714.658 kb on - strand, within CSW01_18040 at 714.660 kb on + strand, within CSW01_18040 at 714.660 kb on + strand, within CSW01_18040 at 714.660 kb on + strand, within CSW01_18040 at 714.668 kb on - strand, within CSW01_18040 at 714.668 kb on - strand, within CSW01_18040 at 714.668 kb on - strand, within CSW01_18040 at 714.668 kb on - strand, within CSW01_18040 at 714.668 kb on - strand, within CSW01_18040 at 714.785 kb on + strand at 714.785 kb on + strand at 714.793 kb on - strand at 714.793 kb on - strand at 714.826 kb on + strand at 715.039 kb on + strand at 715.191 kb on - strand, within CSW01_18045 at 715.201 kb on - strand, within CSW01_18045 at 715.308 kb on + strand, within CSW01_18045 at 715.308 kb on + strand, within CSW01_18045 at 715.316 kb on - strand, within CSW01_18045 at 715.316 kb on - strand, within CSW01_18045 at 715.458 kb on + strand, within CSW01_18045 at 715.466 kb on - strand, within CSW01_18045 at 715.484 kb on - strand, within CSW01_18045 at 715.522 kb on - strand, within CSW01_18045 at 715.739 kb on + strand, within CSW01_18045 at 715.739 kb on + strand, within CSW01_18045 at 715.747 kb on - strand, within CSW01_18045 at 715.772 kb on + strand, within CSW01_18045 at 715.780 kb on - strand, within CSW01_18045 at 715.830 kb on - strand, within CSW01_18045 at 715.840 kb on - strand, within CSW01_18045 at 715.915 kb on + strand at 715.915 kb on + strand at 715.923 kb on - strand at 715.946 kb on - strand at 715.958 kb on + strand at 716.002 kb on + strand at 716.199 kb on + strand at 716.239 kb on + strand at 716.297 kb on + strand at 716.335 kb on - strand at 716.450 kb on + strand, within CSW01_18055 at 716.499 kb on - strand, within CSW01_18055 at 716.529 kb on + strand, within CSW01_18055 at 716.537 kb on - strand, within CSW01_18055 at 716.670 kb on - strand, within CSW01_18055 at 716.704 kb on + strand, within CSW01_18055 at 716.721 kb on + strand, within CSW01_18055 at 716.729 kb on - strand, within CSW01_18055 at 716.767 kb on - strand, within CSW01_18055 at 716.767 kb on - strand, within CSW01_18055 at 716.876 kb on + strand, within CSW01_18055 at 716.951 kb on - strand, within CSW01_18055 at 716.987 kb on - strand at 716.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2 remove 714,020 + CSW01_18040 0.39 -1.7 714,063 + CSW01_18040 0.42 -0.7 714,071 - CSW01_18040 0.42 -0.0 714,073 + CSW01_18040 0.42 -2.9 714,073 + CSW01_18040 0.42 -1.9 714,079 + CSW01_18040 0.43 -0.2 714,251 - CSW01_18040 0.55 -1.5 714,301 + CSW01_18040 0.59 +0.2 714,374 + CSW01_18040 0.64 +3.4 714,382 - CSW01_18040 0.64 +0.1 714,479 - CSW01_18040 0.71 +0.3 714,618 + CSW01_18040 0.81 -0.4 714,621 - CSW01_18040 0.81 -1.4 714,621 - CSW01_18040 0.81 -3.6 714,650 + CSW01_18040 0.83 -1.3 714,650 + CSW01_18040 0.83 -1.7 714,658 - CSW01_18040 0.84 +0.9 714,660 + CSW01_18040 0.84 -0.7 714,660 + CSW01_18040 0.84 +0.7 714,660 + CSW01_18040 0.84 -1.2 714,668 - CSW01_18040 0.84 -2.3 714,668 - CSW01_18040 0.84 +0.1 714,668 - CSW01_18040 0.84 -1.8 714,668 - CSW01_18040 0.84 -0.7 714,668 - CSW01_18040 0.84 +0.1 714,785 + -1.2 714,785 + +1.1 714,793 - +0.3 714,793 - -0.2 714,826 + +1.1 715,039 + -1.7 715,191 - CSW01_18045 0.21 -2.3 715,201 - CSW01_18045 0.22 +0.5 715,308 + CSW01_18045 0.33 +1.1 715,308 + CSW01_18045 0.33 -1.5 715,316 - CSW01_18045 0.33 +1.1 715,316 - CSW01_18045 0.33 -0.0 715,458 + CSW01_18045 0.47 +1.2 715,466 - CSW01_18045 0.48 -1.4 715,484 - CSW01_18045 0.50 +0.3 715,522 - CSW01_18045 0.54 +0.9 715,739 + CSW01_18045 0.75 -2.3 715,739 + CSW01_18045 0.75 -0.8 715,747 - CSW01_18045 0.76 -0.9 715,772 + CSW01_18045 0.78 +1.0 715,780 - CSW01_18045 0.79 -1.8 715,830 - CSW01_18045 0.84 -0.9 715,840 - CSW01_18045 0.85 -2.0 715,915 + -1.2 715,915 + +1.0 715,923 - -0.2 715,946 - +1.1 715,958 + +0.9 716,002 + +0.8 716,199 + -0.7 716,239 + -1.2 716,297 + +0.2 716,335 - -0.6 716,450 + CSW01_18055 0.19 -0.4 716,499 - CSW01_18055 0.25 -3.0 716,529 + CSW01_18055 0.29 -1.7 716,537 - CSW01_18055 0.30 +1.0 716,670 - CSW01_18055 0.48 -2.4 716,704 + CSW01_18055 0.53 -1.8 716,721 + CSW01_18055 0.55 -0.0 716,729 - CSW01_18055 0.56 -1.6 716,767 - CSW01_18055 0.61 +1.0 716,767 - CSW01_18055 0.61 -0.1 716,876 + CSW01_18055 0.76 -0.2 716,951 - CSW01_18055 0.86 -1.2 716,987 - -0.2 716,987 - -2.6
Or see this region's nucleotide sequence