Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17810

Experiment: ICP1_phage_235.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_17800 and CSW01_17805 are separated by 0 nucleotidesCSW01_17805 and CSW01_17810 are separated by 5 nucleotidesCSW01_17810 and CSW01_17815 are separated by 602 nucleotides CSW01_17800: CSW01_17800 - molybdate ABC transporter permease subunit, at 667,234 to 667,932 _17800 CSW01_17805: CSW01_17805 - molybdate ABC transporter substrate-binding protein, at 667,933 to 668,697 _17805 CSW01_17810: CSW01_17810 - cobyric acid synthase CobQ, at 668,703 to 670,157 _17810 CSW01_17815: CSW01_17815 - recombinase RecF, at 670,760 to 672,931 _17815 Position (kb) 668 669 670 671Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 667.831 kb on + strand, within CSW01_17800at 667.858 kb on + strand, within CSW01_17800at 667.866 kb on - strandat 667.881 kb on + strandat 667.889 kb on - strandat 667.889 kb on - strandat 667.925 kb on + strandat 668.128 kb on - strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.216 kb on + strand, within CSW01_17805at 668.219 kb on - strand, within CSW01_17805at 668.220 kb on + strand, within CSW01_17805at 668.224 kb on - strand, within CSW01_17805at 668.260 kb on + strand, within CSW01_17805at 668.345 kb on - strand, within CSW01_17805at 668.379 kb on - strand, within CSW01_17805at 668.427 kb on - strand, within CSW01_17805at 668.427 kb on - strand, within CSW01_17805at 668.546 kb on + strand, within CSW01_17805at 668.551 kb on + strand, within CSW01_17805at 668.559 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.564 kb on - strand, within CSW01_17805at 668.588 kb on + strand, within CSW01_17805at 668.646 kb on - strandat 668.693 kb on + strandat 668.775 kb on + strandat 668.775 kb on + strandat 668.775 kb on + strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.783 kb on - strandat 668.810 kb on + strandat 668.810 kb on + strandat 668.890 kb on + strand, within CSW01_17810at 668.894 kb on - strand, within CSW01_17810at 668.912 kb on - strand, within CSW01_17810at 669.087 kb on + strand, within CSW01_17810at 669.094 kb on - strand, within CSW01_17810at 669.094 kb on - strand, within CSW01_17810at 669.094 kb on - strand, within CSW01_17810at 669.095 kb on - strand, within CSW01_17810at 669.095 kb on - strand, within CSW01_17810at 669.095 kb on - strand, within CSW01_17810at 669.129 kb on - strand, within CSW01_17810at 669.221 kb on - strand, within CSW01_17810at 669.248 kb on + strand, within CSW01_17810at 669.290 kb on - strand, within CSW01_17810at 669.312 kb on - strand, within CSW01_17810at 669.472 kb on - strand, within CSW01_17810at 669.472 kb on - strand, within CSW01_17810at 669.472 kb on - strand, within CSW01_17810at 669.478 kb on + strand, within CSW01_17810at 669.503 kb on - strand, within CSW01_17810at 669.503 kb on - strand, within CSW01_17810at 669.617 kb on + strand, within CSW01_17810at 669.850 kb on + strand, within CSW01_17810at 669.931 kb on + strand, within CSW01_17810at 669.939 kb on - strand, within CSW01_17810at 669.945 kb on + strand, within CSW01_17810at 669.950 kb on + strand, within CSW01_17810at 669.958 kb on - strand, within CSW01_17810at 669.971 kb on - strand, within CSW01_17810at 670.012 kb on - strandat 670.023 kb on + strandat 670.031 kb on - strandat 670.051 kb on + strandat 670.082 kb on - strandat 670.118 kb on + strandat 670.118 kb on + strandat 670.126 kb on - strandat 670.126 kb on - strandat 670.190 kb on + strandat 670.215 kb on + strandat 670.263 kb on + strandat 670.271 kb on - strandat 670.319 kb on - strandat 670.348 kb on - strandat 670.671 kb on - strandat 670.720 kb on + strandat 670.720 kb on + strandat 670.728 kb on - strandat 670.728 kb on - strandat 670.774 kb on - strandat 671.007 kb on - strand, within CSW01_17815at 671.055 kb on + strand, within CSW01_17815

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
remove
667,831 + CSW01_17800 0.85 -0.8
667,858 + CSW01_17800 0.89 +0.4
667,866 - +1.0
667,881 + +1.6
667,889 - +0.5
667,889 - -0.6
667,925 + -0.1
668,128 - CSW01_17805 0.25 +0.5
668,216 + CSW01_17805 0.37 -2.0
668,216 + CSW01_17805 0.37 -0.4
668,216 + CSW01_17805 0.37 +0.3
668,219 - CSW01_17805 0.37 -3.0
668,220 + CSW01_17805 0.38 -0.9
668,224 - CSW01_17805 0.38 +1.3
668,260 + CSW01_17805 0.43 -1.7
668,345 - CSW01_17805 0.54 +0.9
668,379 - CSW01_17805 0.58 +0.5
668,427 - CSW01_17805 0.65 -1.9
668,427 - CSW01_17805 0.65 -1.1
668,546 + CSW01_17805 0.80 -0.5
668,551 + CSW01_17805 0.81 -1.9
668,559 - CSW01_17805 0.82 +0.8
668,564 - CSW01_17805 0.82 +0.5
668,564 - CSW01_17805 0.82 +2.0
668,564 - CSW01_17805 0.82 +3.0
668,588 + CSW01_17805 0.86 +1.1
668,646 - -1.5
668,693 + -2.1
668,775 + +0.9
668,775 + +0.5
668,775 + +0.2
668,783 - -0.4
668,783 - -1.0
668,783 - +2.4
668,783 - -0.1
668,810 + +0.9
668,810 + -0.5
668,890 + CSW01_17810 0.13 +1.0
668,894 - CSW01_17810 0.13 -3.1
668,912 - CSW01_17810 0.14 +2.4
669,087 + CSW01_17810 0.26 +2.1
669,094 - CSW01_17810 0.27 +0.1
669,094 - CSW01_17810 0.27 -0.4
669,094 - CSW01_17810 0.27 +0.2
669,095 - CSW01_17810 0.27 -1.0
669,095 - CSW01_17810 0.27 +1.0
669,095 - CSW01_17810 0.27 +0.8
669,129 - CSW01_17810 0.29 +0.8
669,221 - CSW01_17810 0.36 -0.7
669,248 + CSW01_17810 0.37 -0.8
669,290 - CSW01_17810 0.40 -0.4
669,312 - CSW01_17810 0.42 +0.4
669,472 - CSW01_17810 0.53 +0.6
669,472 - CSW01_17810 0.53 +0.8
669,472 - CSW01_17810 0.53 -3.2
669,478 + CSW01_17810 0.53 -0.2
669,503 - CSW01_17810 0.55 -0.5
669,503 - CSW01_17810 0.55 -0.9
669,617 + CSW01_17810 0.63 -0.6
669,850 + CSW01_17810 0.79 +1.4
669,931 + CSW01_17810 0.84 -2.9
669,939 - CSW01_17810 0.85 +0.8
669,945 + CSW01_17810 0.85 +0.3
669,950 + CSW01_17810 0.86 +0.3
669,958 - CSW01_17810 0.86 -2.5
669,971 - CSW01_17810 0.87 -0.6
670,012 - -0.9
670,023 + +0.9
670,031 - -2.6
670,051 + -1.0
670,082 - +0.6
670,118 + +1.1
670,118 + +0.7
670,126 - +0.3
670,126 - +0.6
670,190 + +0.7
670,215 + -0.5
670,263 + -1.0
670,271 - -1.3
670,319 - -0.3
670,348 - -1.6
670,671 - -1.1
670,720 + +0.5
670,720 + +0.3
670,728 - -1.5
670,728 - +0.3
670,774 - -1.1
671,007 - CSW01_17815 0.11 -1.2
671,055 + CSW01_17815 0.14 +0.4

Or see this region's nucleotide sequence