Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17715

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17710 and CSW01_17715 are separated by 246 nucleotidesCSW01_17715 and CSW01_17720 are separated by 121 nucleotides CSW01_17710: CSW01_17710 - phosphoglycerate transport regulatory protein PgtC, at 646,354 to 647,676 _17710 CSW01_17715: CSW01_17715 - MFS transporter, at 647,923 to 649,302 _17715 CSW01_17720: CSW01_17720 - pyruvate kinase, at 649,424 to 650,884 _17720 Position (kb) 647 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 646.992 kb on - strand, within CSW01_17710at 647.029 kb on + strand, within CSW01_17710at 647.108 kb on - strand, within CSW01_17710at 647.137 kb on - strand, within CSW01_17710at 647.139 kb on + strand, within CSW01_17710at 647.144 kb on + strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.152 kb on - strand, within CSW01_17710at 647.233 kb on + strand, within CSW01_17710at 647.241 kb on - strand, within CSW01_17710at 647.253 kb on - strand, within CSW01_17710at 647.364 kb on + strand, within CSW01_17710at 647.426 kb on - strand, within CSW01_17710at 647.442 kb on - strand, within CSW01_17710at 647.506 kb on + strand, within CSW01_17710at 647.527 kb on + strand, within CSW01_17710at 647.527 kb on - strand, within CSW01_17710at 647.573 kb on + strandat 647.578 kb on + strandat 647.612 kb on - strandat 647.612 kb on - strandat 647.616 kb on + strandat 647.729 kb on - strandat 647.734 kb on - strandat 647.812 kb on + strandat 647.912 kb on + strandat 647.967 kb on - strandat 648.121 kb on - strand, within CSW01_17715at 648.255 kb on - strand, within CSW01_17715at 648.264 kb on + strand, within CSW01_17715at 648.294 kb on + strand, within CSW01_17715at 648.309 kb on - strand, within CSW01_17715at 648.315 kb on + strand, within CSW01_17715at 648.329 kb on + strand, within CSW01_17715at 648.334 kb on + strand, within CSW01_17715at 648.337 kb on - strand, within CSW01_17715at 648.358 kb on - strand, within CSW01_17715at 648.368 kb on + strand, within CSW01_17715at 648.376 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.489 kb on - strand, within CSW01_17715at 648.535 kb on - strand, within CSW01_17715at 648.571 kb on + strand, within CSW01_17715at 648.648 kb on - strand, within CSW01_17715at 648.687 kb on + strand, within CSW01_17715at 648.695 kb on - strand, within CSW01_17715at 648.700 kb on + strand, within CSW01_17715at 648.744 kb on - strand, within CSW01_17715at 648.798 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.855 kb on + strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.863 kb on - strand, within CSW01_17715at 648.867 kb on + strand, within CSW01_17715at 648.875 kb on + strand, within CSW01_17715at 648.883 kb on - strand, within CSW01_17715at 648.924 kb on - strand, within CSW01_17715at 648.925 kb on - strand, within CSW01_17715at 648.964 kb on - strand, within CSW01_17715at 649.022 kb on + strand, within CSW01_17715at 649.022 kb on - strand, within CSW01_17715at 649.123 kb on - strand, within CSW01_17715at 649.185 kb on - strandat 649.188 kb on - strandat 649.228 kb on - strandat 649.457 kb on - strandat 649.667 kb on + strand, within CSW01_17720at 649.675 kb on - strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.742 kb on + strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.750 kb on - strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.752 kb on + strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.760 kb on - strand, within CSW01_17720at 649.800 kb on - strand, within CSW01_17720at 649.822 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 649.853 kb on + strand, within CSW01_17720at 650.057 kb on - strand, within CSW01_17720at 650.120 kb on + strand, within CSW01_17720at 650.142 kb on + strand, within CSW01_17720at 650.150 kb on - strand, within CSW01_17720at 650.245 kb on + strand, within CSW01_17720at 650.247 kb on - strand, within CSW01_17720at 650.300 kb on + strand, within CSW01_17720

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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646,992 - CSW01_17710 0.48 +1.1
647,029 + CSW01_17710 0.51 +0.1
647,108 - CSW01_17710 0.57 +1.0
647,137 - CSW01_17710 0.59 -1.2
647,139 + CSW01_17710 0.59 -0.0
647,144 + CSW01_17710 0.60 +0.4
647,152 - CSW01_17710 0.60 +1.4
647,152 - CSW01_17710 0.60 +0.6
647,233 + CSW01_17710 0.66 +0.1
647,241 - CSW01_17710 0.67 -2.4
647,253 - CSW01_17710 0.68 -1.1
647,364 + CSW01_17710 0.76 +1.1
647,426 - CSW01_17710 0.81 -3.0
647,442 - CSW01_17710 0.82 +0.1
647,506 + CSW01_17710 0.87 -0.0
647,527 + CSW01_17710 0.89 +1.0
647,527 - CSW01_17710 0.89 +0.2
647,573 + -1.5
647,578 + -1.9
647,612 - -2.2
647,612 - -0.5
647,616 + +1.8
647,729 - -2.9
647,734 - -2.7
647,812 + -2.4
647,912 + +1.6
647,967 - +0.1
648,121 - CSW01_17715 0.14 -3.1
648,255 - CSW01_17715 0.24 +1.1
648,264 + CSW01_17715 0.25 +0.7
648,294 + CSW01_17715 0.27 +0.7
648,309 - CSW01_17715 0.28 -0.5
648,315 + CSW01_17715 0.28 -1.6
648,329 + CSW01_17715 0.29 -2.0
648,334 + CSW01_17715 0.30 -0.3
648,337 - CSW01_17715 0.30 +1.0
648,358 - CSW01_17715 0.32 -0.2
648,368 + CSW01_17715 0.32 +0.4
648,376 - CSW01_17715 0.33 -0.3
648,489 - CSW01_17715 0.41 -0.7
648,489 - CSW01_17715 0.41 -1.3
648,535 - CSW01_17715 0.44 +0.9
648,571 + CSW01_17715 0.47 +2.0
648,648 - CSW01_17715 0.53 -0.3
648,687 + CSW01_17715 0.55 -0.1
648,695 - CSW01_17715 0.56 +1.0
648,700 + CSW01_17715 0.56 +1.5
648,744 - CSW01_17715 0.59 +1.3
648,798 + CSW01_17715 0.63 -1.4
648,855 + CSW01_17715 0.68 -0.4
648,855 + CSW01_17715 0.68 +0.1
648,863 - CSW01_17715 0.68 +0.4
648,863 - CSW01_17715 0.68 +0.1
648,867 + CSW01_17715 0.68 +0.1
648,875 + CSW01_17715 0.69 +1.1
648,883 - CSW01_17715 0.70 -0.6
648,924 - CSW01_17715 0.73 -1.3
648,925 - CSW01_17715 0.73 +0.0
648,964 - CSW01_17715 0.75 -1.6
649,022 + CSW01_17715 0.80 -1.9
649,022 - CSW01_17715 0.80 -0.4
649,123 - CSW01_17715 0.87 -1.2
649,185 - -1.0
649,188 - -3.1
649,228 - +0.1
649,457 - -0.7
649,667 + CSW01_17720 0.17 -0.3
649,675 - CSW01_17720 0.17 -1.2
649,742 + CSW01_17720 0.22 -3.3
649,742 + CSW01_17720 0.22 -1.1
649,742 + CSW01_17720 0.22 -2.3
649,742 + CSW01_17720 0.22 -1.9
649,750 - CSW01_17720 0.22 +0.8
649,750 - CSW01_17720 0.22 -1.9
649,750 - CSW01_17720 0.22 -1.4
649,750 - CSW01_17720 0.22 -1.3
649,750 - CSW01_17720 0.22 +1.6
649,750 - CSW01_17720 0.22 +1.3
649,750 - CSW01_17720 0.22 -0.8
649,750 - CSW01_17720 0.22 +0.8
649,752 + CSW01_17720 0.22 -0.8
649,752 + CSW01_17720 0.22 +1.7
649,752 + CSW01_17720 0.22 -2.4
649,760 - CSW01_17720 0.23 +1.1
649,760 - CSW01_17720 0.23 +0.2
649,800 - CSW01_17720 0.26 -2.4
649,822 + CSW01_17720 0.27 +0.9
649,853 + CSW01_17720 0.29 -1.8
649,853 + CSW01_17720 0.29 -0.2
650,057 - CSW01_17720 0.43 -1.4
650,120 + CSW01_17720 0.48 -0.8
650,142 + CSW01_17720 0.49 -1.6
650,150 - CSW01_17720 0.50 +0.5
650,245 + CSW01_17720 0.56 +1.2
650,247 - CSW01_17720 0.56 -1.4
650,300 + CSW01_17720 0.60 -0.9

Or see this region's nucleotide sequence