Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17530

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17520 and CSW01_17525 overlap by 60 nucleotidesCSW01_17525 and CSW01_17530 are separated by 264 nucleotidesCSW01_17530 and CSW01_17535 are separated by 97 nucleotides CSW01_17520: CSW01_17520 - methyl-accepting chemotaxis protein, at 596,737 to 598,500 _17520 CSW01_17525: CSW01_17525 - hypothetical protein, at 598,441 to 598,629 _17525 CSW01_17530: CSW01_17530 - anaerobic C4-dicarboxylate transporter DcuC, at 598,894 to 600,273 _17530 CSW01_17535: CSW01_17535 - L-serine ammonia-lyase, at 600,371 to 601,801 _17535 Position (kb) 598 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 597.907 kb on + strand, within CSW01_17520at 597.915 kb on - strand, within CSW01_17520at 597.917 kb on + strand, within CSW01_17520at 597.917 kb on + strand, within CSW01_17520at 597.923 kb on - strand, within CSW01_17520at 597.925 kb on - strand, within CSW01_17520at 597.925 kb on - strand, within CSW01_17520at 597.997 kb on + strand, within CSW01_17520at 597.997 kb on + strand, within CSW01_17520at 598.039 kb on - strand, within CSW01_17520at 598.111 kb on + strand, within CSW01_17520at 598.117 kb on + strand, within CSW01_17520at 598.119 kb on - strand, within CSW01_17520at 598.182 kb on - strand, within CSW01_17520at 598.220 kb on - strand, within CSW01_17520at 598.299 kb on - strand, within CSW01_17520at 598.330 kb on + strandat 598.330 kb on + strandat 598.330 kb on + strandat 598.338 kb on - strandat 598.340 kb on + strandat 598.349 kb on + strandat 598.377 kb on + strandat 598.418 kb on + strandat 598.426 kb on - strandat 598.426 kb on - strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.428 kb on + strandat 598.444 kb on + strandat 598.446 kb on - strandat 598.450 kb on + strandat 598.507 kb on - strand, within CSW01_17525at 598.645 kb on + strandat 598.863 kb on + strandat 598.930 kb on + strandat 598.930 kb on + strandat 598.966 kb on + strandat 598.968 kb on + strandat 598.968 kb on + strandat 598.968 kb on + strandat 598.974 kb on - strandat 598.992 kb on - strandat 599.002 kb on - strandat 599.073 kb on + strand, within CSW01_17530at 599.087 kb on + strand, within CSW01_17530at 599.098 kb on + strand, within CSW01_17530at 599.242 kb on + strand, within CSW01_17530at 599.250 kb on - strand, within CSW01_17530at 599.306 kb on + strand, within CSW01_17530at 599.306 kb on - strand, within CSW01_17530at 599.389 kb on + strand, within CSW01_17530at 599.511 kb on - strand, within CSW01_17530at 599.638 kb on + strand, within CSW01_17530at 599.720 kb on + strand, within CSW01_17530at 599.800 kb on + strand, within CSW01_17530at 599.800 kb on + strand, within CSW01_17530at 599.832 kb on + strand, within CSW01_17530at 599.840 kb on - strand, within CSW01_17530at 599.911 kb on + strand, within CSW01_17530at 599.911 kb on + strand, within CSW01_17530at 599.919 kb on - strand, within CSW01_17530at 600.174 kb on - strandat 600.208 kb on - strandat 600.229 kb on - strandat 600.242 kb on + strandat 600.242 kb on + strandat 600.242 kb on + strandat 600.245 kb on + strandat 600.355 kb on - strandat 600.517 kb on - strand, within CSW01_17535at 600.562 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.618 kb on - strand, within CSW01_17535at 600.618 kb on - strand, within CSW01_17535at 600.620 kb on - strand, within CSW01_17535at 600.686 kb on - strand, within CSW01_17535at 600.686 kb on - strand, within CSW01_17535at 600.723 kb on + strand, within CSW01_17535at 600.822 kb on - strand, within CSW01_17535at 600.866 kb on + strand, within CSW01_17535at 600.905 kb on - strand, within CSW01_17535at 600.949 kb on + strand, within CSW01_17535at 600.957 kb on - strand, within CSW01_17535at 600.961 kb on - strand, within CSW01_17535at 601.208 kb on + strand, within CSW01_17535at 601.244 kb on - strand, within CSW01_17535

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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597,907 + CSW01_17520 0.66 +1.4
597,915 - CSW01_17520 0.67 +0.7
597,917 + CSW01_17520 0.67 -2.6
597,917 + CSW01_17520 0.67 -2.4
597,923 - CSW01_17520 0.67 -0.0
597,925 - CSW01_17520 0.67 +0.3
597,925 - CSW01_17520 0.67 -0.1
597,997 + CSW01_17520 0.71 +1.2
597,997 + CSW01_17520 0.71 -0.9
598,039 - CSW01_17520 0.74 -0.0
598,111 + CSW01_17520 0.78 -1.0
598,117 + CSW01_17520 0.78 +0.4
598,119 - CSW01_17520 0.78 -0.7
598,182 - CSW01_17520 0.82 +1.7
598,220 - CSW01_17520 0.84 -2.2
598,299 - CSW01_17520 0.89 -2.0
598,330 + -1.5
598,330 + +0.1
598,330 + +0.5
598,338 - +1.8
598,340 + +0.7
598,349 + -0.7
598,377 + -0.0
598,418 + -0.7
598,426 - -0.8
598,426 - +0.4
598,428 + +0.2
598,428 + -2.9
598,428 + +0.1
598,428 + +0.2
598,444 + +0.2
598,446 - -1.4
598,450 + +0.0
598,507 - CSW01_17525 0.35 +0.7
598,645 + +0.4
598,863 + -3.1
598,930 + +0.2
598,930 + +0.4
598,966 + -0.3
598,968 + +2.3
598,968 + -0.4
598,968 + +0.4
598,974 - +0.3
598,992 - +0.0
599,002 - +0.5
599,073 + CSW01_17530 0.13 -0.7
599,087 + CSW01_17530 0.14 +1.8
599,098 + CSW01_17530 0.15 -0.8
599,242 + CSW01_17530 0.25 -1.8
599,250 - CSW01_17530 0.26 -2.5
599,306 + CSW01_17530 0.30 +1.3
599,306 - CSW01_17530 0.30 -2.2
599,389 + CSW01_17530 0.36 +0.1
599,511 - CSW01_17530 0.45 +2.2
599,638 + CSW01_17530 0.54 -1.1
599,720 + CSW01_17530 0.60 -0.0
599,800 + CSW01_17530 0.66 +2.0
599,800 + CSW01_17530 0.66 +1.3
599,832 + CSW01_17530 0.68 +0.0
599,840 - CSW01_17530 0.69 -1.4
599,911 + CSW01_17530 0.74 +0.4
599,911 + CSW01_17530 0.74 +0.9
599,919 - CSW01_17530 0.74 -1.0
600,174 - +2.8
600,208 - +0.4
600,229 - -1.1
600,242 + -1.0
600,242 + +0.5
600,242 + +0.9
600,245 + -0.8
600,355 - +1.7
600,517 - CSW01_17535 0.10 -0.2
600,562 + CSW01_17535 0.13 -0.8
600,610 + CSW01_17535 0.17 -1.8
600,610 + CSW01_17535 0.17 +1.3
600,610 + CSW01_17535 0.17 +2.5
600,610 + CSW01_17535 0.17 -1.5
600,618 - CSW01_17535 0.17 -0.2
600,618 - CSW01_17535 0.17 +0.7
600,620 - CSW01_17535 0.17 +1.1
600,686 - CSW01_17535 0.22 +1.8
600,686 - CSW01_17535 0.22 -1.5
600,723 + CSW01_17535 0.25 +2.0
600,822 - CSW01_17535 0.32 -2.0
600,866 + CSW01_17535 0.35 +0.8
600,905 - CSW01_17535 0.37 +1.1
600,949 + CSW01_17535 0.40 -2.0
600,957 - CSW01_17535 0.41 -2.1
600,961 - CSW01_17535 0.41 +0.2
601,208 + CSW01_17535 0.58 +0.9
601,244 - CSW01_17535 0.61 -0.7

Or see this region's nucleotide sequence