Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17470

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17460 and CSW01_17465 overlap by 4 nucleotidesCSW01_17465 and CSW01_17470 are separated by 271 nucleotidesCSW01_17470 and CSW01_17475 are separated by 165 nucleotides CSW01_17460: CSW01_17460 - D-alanine--D-alanine ligase, at 582,643 to 583,779 _17460 CSW01_17465: CSW01_17465 - DedA family protein, at 583,776 to 584,357 _17465 CSW01_17470: CSW01_17470 - DUF3069 domain-containing protein, at 584,629 to 585,066 _17470 CSW01_17475: CSW01_17475 - PTS maltose transporter subunit IIBC, at 585,232 to 586,671 _17475 Position (kb) 584 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 583.783 kb on - strandat 583.850 kb on + strand, within CSW01_17465at 583.905 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 583.965 kb on - strand, within CSW01_17465at 584.064 kb on - strand, within CSW01_17465at 584.149 kb on + strand, within CSW01_17465at 584.203 kb on + strand, within CSW01_17465at 584.215 kb on + strand, within CSW01_17465at 584.253 kb on - strand, within CSW01_17465at 584.327 kb on - strandat 584.330 kb on - strandat 584.394 kb on - strandat 584.533 kb on + strandat 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.681 kb on + strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.689 kb on - strand, within CSW01_17470at 584.790 kb on - strand, within CSW01_17470at 584.843 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.880 kb on - strand, within CSW01_17470at 584.899 kb on + strand, within CSW01_17470at 584.938 kb on + strand, within CSW01_17470at 584.948 kb on - strand, within CSW01_17470at 584.956 kb on - strand, within CSW01_17470at 584.968 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 584.971 kb on + strand, within CSW01_17470at 585.079 kb on - strandat 585.169 kb on + strandat 585.193 kb on + strandat 585.193 kb on + strandat 585.244 kb on - strandat 585.249 kb on - strandat 585.291 kb on + strandat 585.358 kb on - strandat 585.393 kb on - strand, within CSW01_17475at 585.417 kb on - strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.430 kb on + strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.438 kb on - strand, within CSW01_17475at 585.443 kb on + strand, within CSW01_17475at 585.567 kb on - strand, within CSW01_17475at 585.578 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.608 kb on + strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.616 kb on - strand, within CSW01_17475at 585.687 kb on + strand, within CSW01_17475at 585.692 kb on + strand, within CSW01_17475at 585.694 kb on + strand, within CSW01_17475at 585.762 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.789 kb on - strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.870 kb on + strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.878 kb on - strand, within CSW01_17475at 585.902 kb on - strand, within CSW01_17475at 585.903 kb on + strand, within CSW01_17475at 585.911 kb on - strand, within CSW01_17475at 585.969 kb on - strand, within CSW01_17475

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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583,783 - +1.2
583,850 + CSW01_17465 0.13 +1.4
583,905 - CSW01_17465 0.22 +2.1
583,965 - CSW01_17465 0.32 -1.8
583,965 - CSW01_17465 0.32 -0.4
584,064 - CSW01_17465 0.49 -0.8
584,149 + CSW01_17465 0.64 +3.0
584,203 + CSW01_17465 0.73 +0.5
584,215 + CSW01_17465 0.75 +0.2
584,253 - CSW01_17465 0.82 +0.6
584,327 - -0.9
584,330 - +1.1
584,394 - -1.9
584,533 + -1.0
584,681 + CSW01_17470 0.12 -0.4
584,681 + CSW01_17470 0.12 -1.3
584,681 + CSW01_17470 0.12 -0.3
584,681 + CSW01_17470 0.12 +0.4
584,681 + CSW01_17470 0.12 +0.7
584,681 + CSW01_17470 0.12 -3.3
584,681 + CSW01_17470 0.12 -1.0
584,681 + CSW01_17470 0.12 -2.2
584,681 + CSW01_17470 0.12 -2.4
584,681 + CSW01_17470 0.12 +0.2
584,681 + CSW01_17470 0.12 +2.5
584,689 - CSW01_17470 0.14 +0.9
584,689 - CSW01_17470 0.14 -0.9
584,689 - CSW01_17470 0.14 +0.4
584,689 - CSW01_17470 0.14 -3.0
584,689 - CSW01_17470 0.14 -0.8
584,689 - CSW01_17470 0.14 -2.9
584,689 - CSW01_17470 0.14 -0.4
584,790 - CSW01_17470 0.37 -0.9
584,843 - CSW01_17470 0.49 -0.8
584,880 - CSW01_17470 0.57 +0.6
584,880 - CSW01_17470 0.57 -1.8
584,899 + CSW01_17470 0.62 +0.9
584,938 + CSW01_17470 0.71 -3.0
584,948 - CSW01_17470 0.73 -0.6
584,956 - CSW01_17470 0.75 -0.4
584,968 + CSW01_17470 0.77 +0.5
584,971 + CSW01_17470 0.78 -3.3
584,971 + CSW01_17470 0.78 -2.5
585,079 - +1.0
585,169 + -0.8
585,193 + +0.2
585,193 + -3.1
585,244 - +0.1
585,249 - -1.8
585,291 + +0.0
585,358 - +1.1
585,393 - CSW01_17475 0.11 +1.3
585,417 - CSW01_17475 0.13 -3.7
585,430 + CSW01_17475 0.14 +1.1
585,430 + CSW01_17475 0.14 -1.8
585,430 + CSW01_17475 0.14 -2.9
585,438 - CSW01_17475 0.14 -0.9
585,438 - CSW01_17475 0.14 -0.8
585,443 + CSW01_17475 0.15 +0.5
585,567 - CSW01_17475 0.23 +0.6
585,578 + CSW01_17475 0.24 -2.0
585,608 + CSW01_17475 0.26 +1.6
585,608 + CSW01_17475 0.26 -0.3
585,608 + CSW01_17475 0.26 -0.2
585,608 + CSW01_17475 0.26 -1.4
585,608 + CSW01_17475 0.26 -0.8
585,608 + CSW01_17475 0.26 -1.9
585,616 - CSW01_17475 0.27 -1.5
585,616 - CSW01_17475 0.27 -2.8
585,616 - CSW01_17475 0.27 +0.3
585,616 - CSW01_17475 0.27 +1.1
585,616 - CSW01_17475 0.27 +0.3
585,687 + CSW01_17475 0.32 -2.0
585,692 + CSW01_17475 0.32 -0.3
585,694 + CSW01_17475 0.32 -2.0
585,762 - CSW01_17475 0.37 +0.7
585,789 - CSW01_17475 0.39 -1.0
585,789 - CSW01_17475 0.39 -1.6
585,789 - CSW01_17475 0.39 -0.2
585,870 + CSW01_17475 0.44 +0.1
585,870 + CSW01_17475 0.44 -2.4
585,878 - CSW01_17475 0.45 -1.7
585,878 - CSW01_17475 0.45 +0.2
585,902 - CSW01_17475 0.47 -0.1
585,903 + CSW01_17475 0.47 +1.4
585,911 - CSW01_17475 0.47 +0.3
585,969 - CSW01_17475 0.51 +0.0

Or see this region's nucleotide sequence