Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17340

Experiment: ICP1_phage_235.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17335 and CSW01_17340 are separated by 213 nucleotidesCSW01_17340 and CSW01_17345 are separated by 437 nucleotides CSW01_17335: CSW01_17335 - ligand-gated channel, at 558,455 to 560,809 _17335 CSW01_17340: CSW01_17340 - 23S rRNA methyltransferase, at 561,023 to 561,535 _17340 CSW01_17345: CSW01_17345 - prepilin peptidase, at 561,973 to 564,147 _17345 Position (kb) 561 562Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.031 kb on + strand, within CSW01_17335at 560.031 kb on + strand, within CSW01_17335at 560.203 kb on + strand, within CSW01_17335at 560.203 kb on + strand, within CSW01_17335at 560.208 kb on + strand, within CSW01_17335at 560.209 kb on - strand, within CSW01_17335at 560.226 kb on + strand, within CSW01_17335at 560.288 kb on + strand, within CSW01_17335at 560.295 kb on + strand, within CSW01_17335at 560.296 kb on - strand, within CSW01_17335at 560.303 kb on + strand, within CSW01_17335at 560.337 kb on - strand, within CSW01_17335at 560.382 kb on - strand, within CSW01_17335at 560.382 kb on - strand, within CSW01_17335at 560.496 kb on + strand, within CSW01_17335at 560.504 kb on - strand, within CSW01_17335at 560.512 kb on - strand, within CSW01_17335at 560.558 kb on + strand, within CSW01_17335at 560.642 kb on + strandat 560.642 kb on + strandat 560.645 kb on - strandat 560.695 kb on - strandat 560.833 kb on + strandat 560.994 kb on - strandat 561.186 kb on + strand, within CSW01_17340at 561.266 kb on - strand, within CSW01_17340at 561.405 kb on + strand, within CSW01_17340at 561.413 kb on - strand, within CSW01_17340at 561.413 kb on - strand, within CSW01_17340at 561.437 kb on - strand, within CSW01_17340at 561.482 kb on + strand, within CSW01_17340at 561.531 kb on + strandat 561.539 kb on - strandat 561.666 kb on + strandat 561.674 kb on - strandat 561.674 kb on - strandat 561.674 kb on - strandat 561.835 kb on - strandat 561.888 kb on + strandat 561.903 kb on + strandat 561.903 kb on - strandat 561.946 kb on + strandat 561.946 kb on + strandat 561.954 kb on - strandat 561.970 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.987 kb on + strandat 561.992 kb on + strandat 561.992 kb on + strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.995 kb on - strandat 561.998 kb on + strandat 562.000 kb on - strandat 562.005 kb on - strandat 562.049 kb on - strandat 562.051 kb on - strandat 562.090 kb on - strandat 562.207 kb on + strand, within CSW01_17345at 562.249 kb on + strand, within CSW01_17345at 562.262 kb on + strand, within CSW01_17345at 562.273 kb on + strand, within CSW01_17345at 562.281 kb on - strand, within CSW01_17345at 562.295 kb on + strand, within CSW01_17345at 562.296 kb on + strand, within CSW01_17345at 562.303 kb on - strand, within CSW01_17345at 562.335 kb on + strand, within CSW01_17345at 562.349 kb on + strand, within CSW01_17345at 562.372 kb on + strand, within CSW01_17345at 562.372 kb on + strand, within CSW01_17345at 562.372 kb on + strand, within CSW01_17345at 562.372 kb on + strand, within CSW01_17345at 562.372 kb on - strand, within CSW01_17345at 562.380 kb on - strand, within CSW01_17345

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_235.3_MOI_rep2
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560,031 + CSW01_17335 0.67 -1.7
560,031 + CSW01_17335 0.67 +1.0
560,203 + CSW01_17335 0.74 +0.6
560,203 + CSW01_17335 0.74 +1.3
560,208 + CSW01_17335 0.74 +0.5
560,209 - CSW01_17335 0.74 +0.5
560,226 + CSW01_17335 0.75 -0.5
560,288 + CSW01_17335 0.78 -1.0
560,295 + CSW01_17335 0.78 -0.8
560,296 - CSW01_17335 0.78 -1.5
560,303 + CSW01_17335 0.78 -1.4
560,337 - CSW01_17335 0.80 -2.3
560,382 - CSW01_17335 0.82 +1.4
560,382 - CSW01_17335 0.82 -2.3
560,496 + CSW01_17335 0.87 +0.2
560,504 - CSW01_17335 0.87 +0.7
560,512 - CSW01_17335 0.87 -0.5
560,558 + CSW01_17335 0.89 +0.1
560,642 + -0.2
560,642 + +0.4
560,645 - -0.5
560,695 - -0.3
560,833 + -0.7
560,994 - -0.4
561,186 + CSW01_17340 0.32 -1.2
561,266 - CSW01_17340 0.47 -1.3
561,405 + CSW01_17340 0.74 +0.0
561,413 - CSW01_17340 0.76 -0.0
561,413 - CSW01_17340 0.76 -2.1
561,437 - CSW01_17340 0.81 -0.5
561,482 + CSW01_17340 0.89 -0.9
561,531 + +1.5
561,539 - -2.0
561,666 + -2.9
561,674 - +1.5
561,674 - +0.6
561,674 - -0.1
561,835 - -2.3
561,888 + -1.5
561,903 + -1.3
561,903 - +0.1
561,946 + -0.1
561,946 + +0.5
561,954 - -0.9
561,970 + +1.4
561,987 + +0.6
561,987 + +0.0
561,987 + -0.2
561,987 + +0.4
561,987 + -2.5
561,987 + -0.4
561,987 + +0.2
561,987 + -0.2
561,987 + +0.0
561,987 + +1.0
561,987 + +0.3
561,987 + +1.1
561,987 + +0.4
561,987 + -0.0
561,987 + -0.1
561,987 + +1.3
561,987 + -0.2
561,987 + +0.5
561,992 + -0.3
561,992 + -1.3
561,995 - -2.7
561,995 - -0.4
561,995 - +0.5
561,995 - +0.1
561,995 - -2.2
561,995 - +0.6
561,995 - +0.2
561,995 - -0.8
561,995 - +0.2
561,995 - +0.0
561,995 - -0.2
561,995 - -1.5
561,995 - -0.5
561,995 - +0.7
561,995 - -0.7
561,995 - +1.7
561,995 - +1.2
561,995 - -0.4
561,995 - +0.4
561,995 - +1.2
561,995 - +0.8
561,998 + -2.5
562,000 - -2.0
562,005 - +1.6
562,049 - +1.3
562,051 - -0.9
562,090 - -1.9
562,207 + CSW01_17345 0.11 -2.6
562,249 + CSW01_17345 0.13 +0.9
562,262 + CSW01_17345 0.13 +0.0
562,273 + CSW01_17345 0.14 -1.5
562,281 - CSW01_17345 0.14 -0.2
562,295 + CSW01_17345 0.15 +0.7
562,296 + CSW01_17345 0.15 +0.9
562,303 - CSW01_17345 0.15 -2.5
562,335 + CSW01_17345 0.17 +1.3
562,349 + CSW01_17345 0.17 +0.5
562,372 + CSW01_17345 0.18 +0.5
562,372 + CSW01_17345 0.18 -1.0
562,372 + CSW01_17345 0.18 -1.4
562,372 + CSW01_17345 0.18 +2.6
562,372 - CSW01_17345 0.18 -1.1
562,380 - CSW01_17345 0.19 +0.2

Or see this region's nucleotide sequence